Detailed information NTG0307163

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DXG80_RS06580
• Genome accession: NZ_CP031500
• Coordinates: 1277813..1278979 (+)
• Length: 388 a.a.
• NCBI ID: WP_010888696.1
• Uniprot ID: Q9RSQ9
• Organism: Deinococcus radiodurans strain R1 dM1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1272813..1283979

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DXG80_RS06555 (DXG80_06555)	-	1273026..1273316 (+)	291	WP_027479958.1	hypothetical protein	-
DXG80_RS06560 (DXG80_06560)	-	1273392..1273829 (+)	438	WP_034350316.1	hypothetical protein	-
DXG80_RS06565 (DXG80_06565)	-	1273835..1274845 (-)	1011	WP_010888693.1	WD40 repeat domain-containing protein	-
DXG80_RS06570 (DXG80_06570)	pnp	1274937..1277276 (+)	2340	WP_027479957.1	polyribonucleotide nucleotidyltransferase	-
DXG80_RS06580 (DXG80_06580)	pilD	1277813..1278979 (+)	1167	WP_010888696.1	prepilin peptidase	Machinery gene
DXG80_RS06585 (DXG80_06585)	-	1279181..1279639 (-)	459	WP_010888697.1	divergent PAP2 family protein	-
DXG80_RS06590 (DXG80_06590)	nusB	1279663..1280241 (-)	579	WP_010888698.1	transcription antitermination factor NusB	-
DXG80_RS06595 (DXG80_06595)	-	1280238..1280645 (-)	408	WP_010888699.1	Asp23/Gls24 family envelope stress response protein	-
DXG80_RS06600 (DXG80_06600)	ligA	1280716..1282800 (-)	2085	WP_051618817.1	NAD-dependent DNA ligase LigA	-

Sequence

Protein

• Length: 388 a.a.
• Molecular weight: 41204.65 Da
• Isoelectric Point: 5.8430

>NTDB_id=307163 DXG80_RS06580 WP_010888696.1 1277813..1278979(+) (pilD) [Deinococcus radiodurans strain R1 dM1]
MNVDTLIVLFAGLLGLLVGSFSNVLIWRLPRGENIAFPPSHCPKCDHPLKPTDLVPVFSWLALGGRCRYCRAPINPRYPV
VELLTGVAYAVIAATFPLSTYEAGTLGLMVLFTILLVGSAIDLDTMTLPDELTLPGTLLGVLFGLAGAGLYAQEGQLGLP
NVAQAVEGALMGAGVIVLISVYGSWVLRRFRERQWPEAPIGYQQISLGLLAGAWLGPWWGLGVALLSAAVNVAAKKAVRI
PELLTLGGFLVSLALSSAGTGPGLLDMLRGGLMAAGAVSLVCGVYWWIYWRRNKQAEDDGTDDEQSDPVAMGFGDVKLAA
VIGAFLGWERLLLAVVVAIFAGAVLGLVQLALKQENRVKFGPYLALGAVVALLWGGPLLDWYRGLLGM

Nucleotide

• Length: 1167 bp

>NTDB_id=307163 DXG80_RS06580 WP_010888696.1 1277813..1278979(+) (pilD) [Deinococcus radiodurans strain R1 dM1]
GTGAACGTCGACACCCTCATCGTCCTCTTCGCCGGGCTGCTGGGCCTGCTGGTGGGGTCTTTTTCCAATGTGCTGATCTG
GCGCCTGCCGAGAGGCGAAAACATCGCTTTTCCGCCGAGCCACTGCCCCAAGTGCGACCATCCGCTCAAGCCCACCGACC
TCGTGCCGGTCTTTTCCTGGCTGGCGCTGGGAGGCCGCTGCCGCTACTGCCGCGCACCCATTAACCCGCGCTATCCGGTG
GTGGAACTGCTCACGGGCGTCGCCTACGCCGTCATTGCCGCGACGTTTCCGCTGAGCACCTACGAGGCGGGCACGCTGGG
ACTGATGGTGCTGTTCACGATTTTGCTCGTCGGCAGCGCGATTGACCTCGACACCATGACTCTCCCTGACGAGCTGACGC
TGCCCGGCACCCTGCTCGGCGTGCTGTTCGGGCTCGCGGGCGCGGGGCTCTACGCGCAGGAGGGTCAGTTGGGCCTGCCC
AACGTCGCGCAGGCGGTGGAAGGCGCGCTGATGGGCGCGGGCGTCATCGTCTTGATCAGCGTGTACGGCTCGTGGGTGCT
GCGGCGCTTCCGCGAACGGCAGTGGCCTGAAGCGCCCATCGGTTACCAGCAAATCAGCCTGGGGCTGCTGGCAGGCGCGT
GGCTGGGGCCGTGGTGGGGCCTGGGCGTCGCGCTGCTCTCGGCGGCGGTCAACGTGGCGGCGAAAAAGGCCGTGCGGATT
CCTGAACTGCTCACGCTGGGCGGCTTTCTGGTCAGCCTCGCCCTGAGCAGCGCGGGCACAGGGCCGGGCCTGCTCGACAT
GCTGCGCGGCGGCCTGATGGCGGCGGGCGCCGTCTCGCTCGTCTGCGGCGTGTACTGGTGGATCTACTGGCGGCGCAACA
AGCAGGCTGAAGACGACGGCACCGACGACGAGCAGAGTGACCCGGTGGCGATGGGCTTCGGGGACGTGAAGCTCGCCGCT
GTGATTGGCGCCTTTCTGGGCTGGGAGCGGCTGCTGCTTGCCGTGGTGGTGGCAATTTTTGCGGGCGCCGTGCTGGGGCT
GGTGCAACTCGCGCTCAAGCAGGAAAACCGGGTCAAGTTCGGCCCTTACCTCGCCCTGGGGGCCGTCGTCGCGCTGCTGT
GGGGCGGGCCGCTGCTGGACTGGTACCGGGGGCTGCTAGGGATGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (109-229)

• Type IV leader peptidase family (Peptidase_A24) (238-347)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-96)

3D structure

• AlphaFold DB: Q9RSQ9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	100	100	1