Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   DXG80_RS03105 Genome accession   NZ_CP031500
Coordinates   596061..596681 (+) Length   206 a.a.
NCBI ID   WP_027480036.1    Uniprot ID   -
Organism   Deinococcus radiodurans strain R1 dM1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 591061..601681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXG80_RS03080 (DXG80_03075) - 591193..591744 (-) 552 WP_027480035.1 TetR/AcrR family transcriptional regulator -
  DXG80_RS03085 (DXG80_03080) - 591924..592415 (+) 492 WP_010888024.1 DUF4142 domain-containing protein -
  DXG80_RS03090 (DXG80_03085) ychF 592774..593871 (+) 1098 WP_010888025.1 redox-regulated ATPase YchF -
  DXG80_RS03095 (DXG80_03090) - 593935..595050 (-) 1116 WP_010888026.1 N-acetylmuramoyl-L-alanine amidase -
  DXG80_RS03100 (DXG80_03095) - 595225..595878 (+) 654 WP_010888027.1 hypothetical protein -
  DXG80_RS03105 (DXG80_03100) comF 596061..596681 (+) 621 WP_027480036.1 ComF family protein Machinery gene
  DXG80_RS03110 (DXG80_03105) - 596692..597240 (-) 549 WP_010888029.1 DUF1684 domain-containing protein -
  DXG80_RS03115 (DXG80_03110) - 597237..597458 (-) 222 WP_027480037.1 RNA-binding S4 domain-containing protein -
  DXG80_RS03120 (DXG80_03115) - 597671..598606 (+) 936 WP_027480038.1 hypothetical protein -
  DXG80_RS03125 (DXG80_03120) - 598663..599376 (-) 714 WP_010888032.1 histidine phosphatase family protein -
  DXG80_RS03130 (DXG80_03125) purM 599373..600437 (-) 1065 WP_010888033.1 phosphoribosylformylglycinamidine cyclo-ligase -
  DXG80_RS03135 (DXG80_03130) crtE 600502..601491 (+) 990 WP_010888034.1 geranylgeranyl diphosphate synthase CrtE -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 21651.22 Da        Isoelectric Point: 10.9813

>NTDB_id=307155 DXG80_RS03105 WP_027480036.1 596061..596681(+) (comF) [Deinococcus radiodurans strain R1 dM1]
MIDLLRVLLPRACPGCGAQLGRAAGLCDRCRAELRPRVERHSPLSAQATPHLVTLGRYQGVPRRAVRALKYGGARDVAGP
LGRALAAGVPASWQIAAVVPVPLHPSRQRERGYNQAELLAQAMAAELGVPCLPLLTRTRATAQQAKLHASERSSNLAGAF
AVRGAVPPGTLLILDDVLTTGSTLLACRDALHAAGVTDLKYAAVAR

Nucleotide


Download         Length: 621 bp        

>NTDB_id=307155 DXG80_RS03105 WP_027480036.1 596061..596681(+) (comF) [Deinococcus radiodurans strain R1 dM1]
ATGATCGACCTGCTGCGAGTGCTGCTGCCCCGCGCCTGCCCCGGCTGCGGCGCCCAGCTGGGCCGCGCCGCCGGGCTGTG
TGACCGCTGCCGCGCGGAGCTTCGACCCCGGGTGGAGCGGCACTCGCCCCTCTCGGCGCAGGCCACGCCGCATCTGGTCA
CGCTGGGGCGGTACCAGGGCGTCCCCCGCCGGGCGGTACGGGCGCTGAAATACGGCGGGGCGCGGGACGTGGCCGGGCCG
CTGGGGCGGGCGCTCGCAGCGGGGGTTCCGGCGAGCTGGCAAATAGCCGCTGTGGTGCCGGTGCCGCTGCATCCTTCGCG
CCAGCGTGAGCGCGGGTACAACCAGGCCGAGTTGCTGGCGCAGGCGATGGCCGCTGAGCTGGGGGTGCCTTGCCTGCCGC
TCCTCACCCGCACCCGCGCCACCGCTCAGCAGGCCAAGTTGCACGCCAGCGAGCGCAGCAGCAATCTGGCGGGGGCTTTC
GCGGTGCGCGGCGCCGTGCCGCCAGGCACCCTCCTCATTCTGGACGATGTGCTGACGACCGGCAGCACGCTCCTGGCCTG
CCGGGACGCCCTGCACGCGGCGGGCGTGACCGACCTGAAATACGCGGCGGTAGCGCGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(4-38)

Phosphoribosyl transferase domain (Pribosyltran)

(116-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

100

100

1

Multiple sequence alignment