Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   SDEG_RS09190 Genome accession   NC_012891
Coordinates   1818361..1820697 (-) Length   778 a.a.
NCBI ID   WP_012767539.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis GGS_124     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1813361..1825697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDEG_RS09165 (SDEG_1884) rpsF 1813484..1813774 (-) 291 WP_002983117.1 30S ribosomal protein S6 -
  SDEG_RS11400 (SDEG_1885) - 1814733..1814969 (-) 237 WP_012767537.1 hypothetical protein -
  SDEG_RS09175 (SDEG_1886) mutY 1815192..1816358 (+) 1167 WP_003060012.1 A/G-specific adenine glycosylase -
  SDEG_RS09180 (SDEG_1887) trxA 1816409..1816723 (-) 315 WP_003052691.1 thioredoxin -
  SDEG_RS09185 (SDEG_1888) - 1816949..1818268 (+) 1320 WP_012767538.1 FAD-containing oxidoreductase -
  SDEG_RS09190 (SDEG_1889) mutS/mutS2 1818361..1820697 (-) 2337 WP_012767539.1 endonuclease MutS2 Machinery gene
  SDEG_RS09195 (SDEG_1890) - 1820853..1821398 (-) 546 WP_012767540.1 CvpA family protein -
  SDEG_RS09200 (SDEG_1891) - 1821401..1821709 (-) 309 WP_003052702.1 hypothetical protein -
  SDEG_RS09205 (SDEG_1892) rnhC 1821866..1822765 (+) 900 WP_003061515.1 ribonuclease HIII -
  SDEG_RS09210 (SDEG_1893) lepB 1822787..1823380 (+) 594 WP_012767541.1 signal peptidase I -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87047.64 Da        Isoelectric Point: 6.7996

>NTDB_id=30707 SDEG_RS09190 WP_012767539.1 1818361..1820697(-) (mutS/mutS2) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
MDKKILEQLEFDKVKEQFRAYLQTEQGNRELDQLEPLNHHDKIKHYFLEIEEMAGIFVEQHHFALGSLSDISASMRRLEL
EADLSIPELLAVKKILQVSAEASRFYVDLENVQLQALKRLFENLELFPSLQGSLQAINDGGFVESFASPELEKIRRSISD
KEHASRNVLQDLLKKQGDYLSESLIAGRNGRSVLPVKNTFRNKVAGVVHDISASGNTVYIEPRALVQLNEELTQLQADER
HEVSRVLQALSDLIRPHSRALTNNAWILGHLDFIRAKYLYMRDNKATVPAISDDKSLQLLNVRHPLLQEPVANDLHFSKD
LAVIVITGPNTGGKTIMLKTLGLAQLMAQSGLPILADKGSKVAVFSGIFADIGDEQSIEQSLSTFSSHMTHIVAILNQAD
ADSLVLFDELGAGTDPQEGASLAMAILEQLRLTNIKTMATTHYPELKAYGIETPYVENASMEFDSMSLKPTYRFMQGVPG
RSNAFEIARRLGLAEHIVKEAQNMTDTDSDVNRIIEQLEKQTLESRKRLDHIREVEQDNLKFNRAVKKLYNEFSQAKDKE
IEKATLEAREIVDLALAESDSILNQLHDKAALKPHEVIEAKGQLKQLVPEKSLSQNKVLKKAKQLRAPRVGDDIIVTAYG
QRGTLVKELKDKKWEAQVGLIKMTLKEDEFSLVKVVEEVQKPKKKAINVVKKAATGGGPRARLDLRGKRYEEAMQELDAF
IDQALLNNMSQVDIIHGIGTGVIREAVTKYLRRNKHVKSFGYAPQNAGGSGCTIANLG

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=30707 SDEG_RS09190 WP_012767539.1 1818361..1820697(-) (mutS/mutS2) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
ATGGATAAAAAGATTTTAGAACAGTTAGAATTTGATAAGGTCAAAGAACAATTTCGGGCCTACCTGCAGACAGAGCAGGG
GAACCGTGAATTAGACCAACTTGAACCCCTCAATCATCATGACAAAATCAAACATTACTTTTTAGAAATTGAAGAGATGG
CTGGCATTTTTGTAGAGCAACATCACTTTGCATTGGGCAGTCTGTCTGACATTTCAGCTAGCATGAGACGTTTGGAACTG
GAAGCTGATTTGAGCATTCCCGAATTATTAGCAGTCAAAAAAATACTTCAGGTATCAGCAGAAGCGAGTCGCTTTTATGT
TGATTTGGAAAACGTTCAGCTGCAAGCCTTGAAGCGTTTGTTTGAAAATCTGGAGCTTTTTCCTAGCCTTCAAGGCAGTC
TTCAGGCTATTAATGACGGTGGTTTTGTGGAAAGTTTTGCCAGTCCCGAGTTAGAAAAAATTCGTCGTAGCATCTCAGAC
AAAGAACATGCGAGCCGGAATGTCTTACAAGATTTACTCAAAAAGCAAGGTGACTATTTGTCAGAAAGCTTGATTGCTGG
CCGAAACGGGCGTAGTGTCTTACCTGTCAAAAACACTTTCCGTAATAAGGTGGCAGGGGTCGTTCACGATATTTCGGCTT
CAGGAAATACGGTTTATATTGAACCACGAGCTCTTGTTCAACTAAATGAAGAGCTGACGCAGTTACAAGCCGACGAACGC
CATGAAGTGTCACGTGTCCTTCAAGCCTTATCTGACCTCATCAGACCTCATAGTCGAGCTCTTACCAATAATGCTTGGAT
TCTGGGGCATCTGGATTTTATCAGAGCCAAATACCTCTATATGAGAGACAATAAGGCCACGGTCCCGGCTATTTCGGATG
ATAAAAGTTTACAGTTGTTAAATGTGCGCCACCCTCTTTTGCAGGAGCCAGTTGCTAATGATTTGCATTTCTCTAAAGAT
TTGGCTGTTATTGTGATTACTGGTCCGAATACTGGTGGTAAAACCATCATGCTAAAAACACTTGGTTTAGCCCAGCTAAT
GGCCCAATCGGGTCTGCCTATTCTAGCAGATAAAGGTTCCAAAGTTGCTGTTTTTAGTGGTATTTTTGCTGATATTGGCG
ATGAACAATCCATTGAGCAGAGCTTATCAACTTTCTCTAGCCATATGACTCATATTGTTGCTATTTTGAATCAAGCTGAT
GCAGACAGTTTAGTACTCTTTGATGAGCTAGGGGCAGGAACAGATCCGCAAGAAGGAGCAAGTCTTGCTATGGCAATCTT
GGAGCAGTTACGCTTAACTAATATCAAAACCATGGCGACTACCCATTACCCTGAACTAAAAGCATATGGCATCGAAACTC
CCTATGTGGAAAATGCCAGTATGGAGTTCGATAGCATGAGTTTAAAACCAACTTACCGCTTTATGCAGGGAGTTCCAGGT
CGTTCAAATGCCTTTGAAATTGCTAGACGCCTTGGGTTGGCAGAGCACATTGTCAAAGAAGCTCAAAACATGACAGACAC
AGATAGTGATGTTAACCGTATTATCGAACAGTTAGAGAAACAAACTCTGGAGAGTCGTAAGCGGCTTGATCATATTCGAG
AAGTGGAGCAAGATAACCTCAAATTTAACCGTGCGGTTAAAAAATTGTACAATGAGTTCTCACAGGCCAAAGATAAGGAA
ATTGAAAAAGCTACCCTTGAAGCGCGTGAGATCGTAGACTTAGCTTTAGCAGAAAGTGACAGTATTTTAAACCAGTTGCA
TGACAAAGCTGCACTTAAACCTCACGAAGTTATTGAAGCCAAGGGGCAACTCAAACAGTTAGTGCCAGAAAAGAGTCTTT
CTCAAAACAAGGTCCTAAAGAAAGCGAAGCAATTACGAGCTCCTCGAGTAGGAGACGATATTATTGTAACAGCCTATGGC
CAAAGAGGAACCTTGGTAAAAGAACTCAAAGATAAGAAGTGGGAAGCGCAAGTTGGACTGATCAAAATGACCCTCAAAGA
AGATGAATTTAGTCTTGTGAAGGTTGTTGAGGAAGTTCAAAAACCAAAGAAAAAAGCCATCAACGTGGTCAAGAAGGCTG
CTACTGGTGGTGGTCCTCGTGCCCGTCTGGATTTGCGTGGCAAACGGTATGAAGAAGCGATGCAAGAACTAGACGCCTTT
ATTGACCAAGCTCTCTTAAATAATATGAGCCAAGTGGATATTATTCATGGGATTGGCACTGGTGTAATCCGTGAAGCTGT
TACCAAATACCTCAGACGAAACAAACATGTTAAAAGCTTTGGTTATGCTCCACAGAATGCGGGTGGATCAGGGTGTACCA
TTGCGAACTTAGGTTGA

Domains

Predicted by InterProScan.

Smr domain (Smr)

(703-776)

MutS2 and Smr-associated SH3 domain (MSSS)

(630-669)

MutS domain V (MutS_V)

(324-505)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

40.506

100

0.411

Multiple sequence alignment