Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   DVV14_RS12595 Genome accession   NZ_CP031472
Coordinates   2718107..2718811 (+) Length   234 a.a.
NCBI ID   WP_064488880.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain RE22     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2713107..2723811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVV14_RS12580 (DVV14_12645) - 2714271..2716598 (+) 2328 WP_064488881.1 Tex family protein -
  DVV14_RS12585 (DVV14_12650) - 2716671..2717141 (-) 471 WP_006957199.1 hypothetical protein -
  DVV14_RS12590 (DVV14_12655) bioH 2717251..2718048 (-) 798 WP_021458363.1 pimeloyl-ACP methyl ester esterase BioH -
  DVV14_RS12595 (DVV14_12660) comF 2718107..2718811 (+) 705 WP_064488880.1 phosphoribosyltransferase family protein Machinery gene
  DVV14_RS12600 (DVV14_12665) nfuA 2718905..2719492 (+) 588 WP_006957194.1 Fe-S biogenesis protein NfuA -
  DVV14_RS12605 (DVV14_12670) nudE 2719624..2720172 (+) 549 WP_006957191.1 ADP compounds hydrolase NudE -
  DVV14_RS12610 (DVV14_12675) cysQ 2720199..2721026 (+) 828 WP_064488879.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  DVV14_RS12615 (DVV14_12680) recG 2721117..2723195 (-) 2079 WP_064488878.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 27137.72 Da        Isoelectric Point: 8.6387

>NTDB_id=307064 DVV14_RS12595 WP_064488880.1 2718107..2718811(+) (comF) [Vibrio coralliilyticus strain RE22]
MLTDWIKKHTAYLLPSHCDLCQMAIGVQAAHPLFCCFCLRRFAPVPRCRRCGLVTPEYVEMCGECLVAPPLWTHLYCVGD
YQPPLSSYVHRLKYEGQYWQAKTLSLLLVSRIDTRPDLITFVPLHWRRYCYRGYNQSQHLAWQIGRELDVPCEALFKKKR
ATERQQGMDKKQRKENVRQAFHLRKSINIEHVAIVDDVLTTGSTVHQLCELLLGAGVKTIDIYCICRTPEPSSR

Nucleotide


Download         Length: 705 bp        

>NTDB_id=307064 DVV14_RS12595 WP_064488880.1 2718107..2718811(+) (comF) [Vibrio coralliilyticus strain RE22]
ATGTTAACCGATTGGATTAAGAAACACACAGCCTACCTGTTACCCAGTCATTGCGATTTGTGCCAGATGGCGATCGGAGT
GCAAGCGGCGCACCCCTTATTCTGCTGTTTCTGTCTGCGACGTTTTGCGCCAGTTCCTCGCTGCAGACGATGTGGCTTGG
TGACCCCTGAGTACGTCGAAATGTGTGGGGAATGTTTAGTTGCCCCGCCATTGTGGACGCACTTGTATTGTGTCGGAGAC
TATCAACCGCCGCTATCGAGTTACGTTCACCGACTTAAGTACGAAGGTCAGTACTGGCAGGCTAAAACCTTGTCTTTGCT
GTTGGTGTCACGCATCGACACTCGACCAGACCTGATTACTTTTGTCCCCTTGCACTGGCGTCGTTACTGTTATCGTGGCT
ACAACCAAAGTCAGCATCTGGCATGGCAAATTGGTCGAGAGCTGGATGTGCCTTGTGAGGCTCTATTTAAGAAAAAGCGT
GCAACGGAAAGGCAACAAGGAATGGATAAAAAGCAGCGTAAGGAGAATGTGCGTCAGGCTTTTCATCTAAGAAAGTCGAT
AAATATCGAGCATGTCGCTATTGTCGATGATGTGCTAACTACAGGCAGTACCGTGCATCAATTATGTGAATTATTGCTCG
GTGCTGGAGTGAAAACCATTGATATTTATTGCATTTGTCGCACTCCTGAACCTTCTAGCCGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(141-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

50.862

99.145

0.504
  comF Vibrio campbellii strain DS40M4

46.053

97.436

0.449

Multiple sequence alignment