Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DXX91_RS08505 Genome accession   NZ_CP031424
Coordinates   1643073..1643852 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain B-4     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1638073..1648852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXX91_RS08485 trmFO 1638760..1640067 (+) 1308 WP_072588509.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  DXX91_RS08490 xerC 1640137..1641054 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  DXX91_RS08495 hslV 1641070..1641615 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  DXX91_RS08500 hslU 1641623..1643035 (+) 1413 WP_254900101.1 HslU--HslV peptidase ATPase subunit -
  DXX91_RS08505 codY 1643073..1643852 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DXX91_RS08510 flgB 1644206..1644595 (+) 390 WP_095318220.1 flagellar basal body rod protein FlgB -
  DXX91_RS08515 flgC 1644595..1645047 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  DXX91_RS08520 fliE 1645058..1645378 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  DXX91_RS08525 fliF 1645421..1647031 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  DXX91_RS08530 fliG 1647044..1648060 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  DXX91_RS08535 fliH 1648053..1648808 (+) 756 WP_032856803.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=306677 DXX91_RS08505 WP_003154263.1 1643073..1643852(+) (codY) [Bacillus velezensis strain B-4]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=306677 DXX91_RS08505 WP_003154263.1 1643073..1643852(+) (codY) [Bacillus velezensis strain B-4]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCTCTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment