Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | KAN02_RS01840 | Genome accession | NZ_CP036171 |
| Coordinates | 392951..393415 (+) | Length | 154 a.a. |
| NCBI ID | WP_039246158.1 | Uniprot ID | - |
| Organism | Acinetobacter nosocomialis strain KAN02 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 387951..398415
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KAN02_RS01825 (KAN02_01825) | - | 387992..388774 (+) | 783 | WP_087606429.1 | pilus assembly PilX N-terminal domain-containing protein | - |
| KAN02_RS01830 (KAN02_01830) | - | 388790..392467 (+) | 3678 | WP_087606430.1 | PilC/PilY family type IV pilus protein | - |
| KAN02_RS01835 (KAN02_01835) | comE | 392481..392957 (+) | 477 | WP_039246155.1 | type IV pilin protein | Machinery gene |
| KAN02_RS01840 (KAN02_01840) | comF | 392951..393415 (+) | 465 | WP_039246158.1 | type IV pilin protein | Machinery gene |
| KAN02_RS01845 (KAN02_01845) | rpsP | 393563..393814 (+) | 252 | WP_000260334.1 | 30S ribosomal protein S16 | - |
| KAN02_RS01850 (KAN02_01850) | rimM | 393834..394382 (+) | 549 | WP_004711694.1 | ribosome maturation factor RimM | - |
| KAN02_RS01855 (KAN02_01855) | trmD | 394429..395184 (+) | 756 | WP_004884678.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| KAN02_RS01860 (KAN02_01860) | rplS | 395400..395768 (+) | 369 | WP_002051668.1 | 50S ribosomal protein L19 | - |
| KAN02_RS01865 (KAN02_01865) | - | 395820..396761 (-) | 942 | WP_079377864.1 | lipase family alpha/beta hydrolase | - |
| KAN02_RS01870 (KAN02_01870) | - | 396876..397910 (-) | 1035 | WP_002051740.1 | lipase secretion chaperone | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 16792.26 Da Isoelectric Point: 8.9643
>NTDB_id=306648 KAN02_RS01840 WP_039246158.1 392951..393415(+) (comF) [Acinetobacter nosocomialis strain KAN02]
MVNKIKGFTLIELMIVVAIIAILVAIAYPSYQEYIRRTNRADMQTTLQQIAMHIQRYKIANFRVTGATSSDLNIATSYPI
QGTPLYTVNLAPVTAGALNAEAWILTATPIANTSQSGDGHIVLNYRGERCWTKGTDINNGTACVPSATSNWDGK
MVNKIKGFTLIELMIVVAIIAILVAIAYPSYQEYIRRTNRADMQTTLQQIAMHIQRYKIANFRVTGATSSDLNIATSYPI
QGTPLYTVNLAPVTAGALNAEAWILTATPIANTSQSGDGHIVLNYRGERCWTKGTDINNGTACVPSATSNWDGK
Nucleotide
Download Length: 465 bp
>NTDB_id=306648 KAN02_RS01840 WP_039246158.1 392951..393415(+) (comF) [Acinetobacter nosocomialis strain KAN02]
GTGGTAAATAAAATAAAAGGCTTTACATTAATTGAGCTAATGATTGTTGTAGCTATTATCGCGATTTTAGTGGCGATAGC
TTACCCCTCTTATCAAGAATATATTCGTCGTACTAATCGTGCGGATATGCAAACTACGTTGCAACAGATTGCTATGCATA
TCCAACGCTACAAAATTGCAAATTTTAGAGTAACGGGTGCAACGAGTTCTGATTTAAATATTGCCACTTCTTATCCTATA
CAAGGCACACCTCTTTATACAGTCAATTTGGCTCCAGTGACAGCTGGAGCTTTAAATGCGGAAGCATGGATATTGACCGC
GACGCCGATTGCAAATACTTCGCAGTCCGGTGATGGGCATATTGTTTTAAATTATCGTGGTGAGCGTTGCTGGACAAAGG
GAACTGATATTAACAATGGTACGGCTTGCGTTCCTTCTGCAACATCAAATTGGGATGGTAAATAA
GTGGTAAATAAAATAAAAGGCTTTACATTAATTGAGCTAATGATTGTTGTAGCTATTATCGCGATTTTAGTGGCGATAGC
TTACCCCTCTTATCAAGAATATATTCGTCGTACTAATCGTGCGGATATGCAAACTACGTTGCAACAGATTGCTATGCATA
TCCAACGCTACAAAATTGCAAATTTTAGAGTAACGGGTGCAACGAGTTCTGATTTAAATATTGCCACTTCTTATCCTATA
CAAGGCACACCTCTTTATACAGTCAATTTGGCTCCAGTGACAGCTGGAGCTTTAAATGCGGAAGCATGGATATTGACCGC
GACGCCGATTGCAAATACTTCGCAGTCCGGTGATGGGCATATTGTTTTAAATTATCGTGGTGAGCGTTGCTGGACAAAGG
GAACTGATATTAACAATGGTACGGCTTGCGTTCCTTCTGCAACATCAAATTGGGATGGTAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Acinetobacter baylyi ADP1 |
48.649 |
96.104 |
0.468 |
| pilE | Acinetobacter baumannii D1279779 |
47.26 |
94.805 |
0.448 |