Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SDEG_RS01060 Genome accession   NC_012891
Coordinates   187820..189109 (-) Length   429 a.a.
NCBI ID   WP_003056985.1    Uniprot ID   A0ABU0A931
Organism   Streptococcus dysgalactiae subsp. equisimilis GGS_124     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 182820..194109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDEG_RS01030 (SDEG_0208) - 184142..184435 (-) 294 WP_012766496.1 hypothetical protein -
  SDEG_RS01035 (SDEG_0209) - 184498..184737 (-) 240 WP_012766497.1 hypothetical protein -
  SDEG_RS01040 (SDEG_0210) - 184881..185789 (+) 909 WP_012766498.1 ABC transporter ATP-binding protein -
  SDEG_RS01045 (SDEG_0211) - 185816..186616 (+) 801 WP_012766499.1 ABC transporter permease -
  SDEG_RS01050 (SDEG_0212) - 186662..187378 (+) 717 Protein_175 ISL3 family transposase -
  SDEG_RS01060 (SDEG_0215) rarA 187820..189109 (-) 1290 WP_003056985.1 replication-associated recombination protein A Machinery gene
  SDEG_RS01065 (SDEG_0216) - 189142..189708 (-) 567 WP_012766501.1 aminodeoxychorismate/anthranilate synthase component II -
  SDEG_RS01070 (SDEG_0217) pabB 189741..191498 (-) 1758 WP_041788735.1 aminodeoxychorismate synthase component I -
  SDEG_RS01075 (SDEG_0218) - 191698..192168 (+) 471 WP_002987990.1 DUF3013 family protein -
  SDEG_RS01080 (SDEG_0219) prmA 192239..193192 (+) 954 WP_012766503.1 50S ribosomal protein L11 methyltransferase -
  SDEG_RS01085 (SDEG_0220) - 193192..193950 (+) 759 WP_012766504.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -

Sequence

Protein


Download         Length: 429 a.a.        Molecular weight: 47270.04 Da        Isoelectric Point: 7.3658

>NTDB_id=30637 SDEG_RS01060 WP_003056985.1 187820..189109(-) (rarA) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
MPDHLALRMRPKTISEVIGQEHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKRALR
TAITDKERGFAFDVMLDDNALDFIATATNGDLRSAYHSLDLAVMSTKPDSDGKRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKAIRGSDVNASLHYAARLVEAGDLPSLARRLIVIAYEDIGLANPDAQVHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALSDLRTSGNLPIPRHLRDGHYAGSKELGNAKDYLYPHAYPKKWVKQQYLPDKLIGKQYFSP
NETGKYERALGANKERIDKLSSHSTGIPK

Nucleotide


Download         Length: 1290 bp        

>NTDB_id=30637 SDEG_RS01060 WP_003056985.1 187820..189109(-) (rarA) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
ATGCCCGATCATTTAGCGCTCCGCATGCGCCCCAAAACCATTTCAGAGGTCATCGGACAAGAACATCTTGTTGGAGAAGG
TAAAATCATCCGTCGCATGGTGGAAGCCAATATGCTATCGTCCATGATTCTCTATGGTCCTCCAGGAATCGGTAAAACTT
CCATTGCTAGCGCTATTGCAGGTACCACCAAGTATGCCTTTCGGACCTTTAATGCCACCGTTGATAGCAAAAAACGTCTC
CAAGAAATTGCTGAGGAGGCCAAATTTTCAGGAGGATTGGTATTGCTACTAGACGAGATTCATCGGCTAGACAAAACCAA
ACAAGACTTCCTGCTCCCCTTACTGGAAAATGGTACCATTATCATGATTGGCGCAACCACTGAGAATCCCTTCTTTTCAG
TGACACCAGCTATCAGAAGCAGGGTCCAGATTTTTGAACTGGAACCTCTCTCCAACGAGGATATCAAGCGTGCCCTTCGA
ACTGCCATTACCGATAAAGAAAGAGGCTTTGCCTTTGACGTGATGCTTGACGATAATGCTCTTGATTTTATCGCAACAGC
CACCAATGGCGATTTACGCTCAGCCTATCACTCCTTGGATCTAGCAGTCATGTCTACAAAGCCAGATAGCGATGGGAAGC
GACACATCACCTTAGACACTGTTGAAAATTCCTTGCAGCGCAGCTATATTACCATGGATAAAGATGGCGACGGGCATTAT
GATGTCCTATCTGCCCTCCAAAAAGCTATTCGTGGTTCCGATGTCAATGCCAGTCTTCACTATGCGGCACGATTAGTGGA
AGCAGGCGATTTACCAAGCCTAGCTAGGCGGTTGATTGTGATTGCTTATGAAGATATTGGTTTGGCTAATCCTGACGCCC
AAGTCCATACCGTTACCGCACTTGATGCCGCTCAGAAAATCGGCTTTCCAGAAGCACGTATTCTAATTGCTAACGTGGTC
ATTGATTTGGCCTTATCCCCAAAATCCAACTCAGCTTATCTGGCCATGGATGCTGCCTTAAGCGATTTGAGAACATCAGG
AAACCTTCCTATTCCAAGGCATTTGAGAGATGGGCATTATGCTGGCAGTAAAGAACTGGGGAATGCCAAAGATTACCTTT
ACCCCCACGCTTACCCTAAAAAATGGGTCAAACAACAGTACCTGCCAGATAAATTAATCGGTAAACAGTATTTTTCCCCA
AACGAAACAGGAAAATATGAACGCGCCCTGGGTGCCAACAAAGAGCGTATTGACAAGCTTTCTAGTCACTCAACCGGTAT
CCCAAAGTAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(174-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.671

97.203

0.59

Multiple sequence alignment