Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   DV167_RS00005 Genome accession   NZ_CP031329
Coordinates   2236547..211 (+) Length   1070 a.a.
NCBI ID   WP_002251483.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22425     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2231547..5211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - recC 2236547..211 (+) -2236335 - - Machinery gene

Sequence

Protein


Download         Length: 1070 a.a.        Molecular weight: 120659.31 Da        Isoelectric Point: 4.8239

>NTDB_id=305766 DV167_RS00005 WP_002251483.1 2236547..211(+) (recC) [Neisseria meningitidis strain M22425]
MFYLYQSNRLETLAALFAHIQKVKPLKSALQPEQIIVQSQGMRRYLNTCLARDLGVAANLAFSLPASLTWKLMKKLIPGI
PELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILG
LGDDEIWQSKLWRYLDDGRQSAPHRVALWEKLLAALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNPSGM
YWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENV
GSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVK
ISRRQPFFYTLECLSDLLESRFEVDKVLALLETAPVLRRFGLTEDDLPLLHDMVADLNVHWGLDGEMRGGTDQLFTWKQA
VERMILGWMLPEGGNPMWQDVSAWYADVNQTALFGRFAAFLETLTDIVRIWRQPATVDEWVGRCRGLLKTLFQAEADDQK
AVQNLENEWVKWQAETELAQFSGQLPPHTVIRHIRRFLDSESEAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRN
TKAAVFDLIAKHPAKGDRARRDDDRYLFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMTGTNSRQLAQ
NLIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPQPFFDQPVENAEPVAEIGQDEFIRFWRNPVKVWLQQQ
LAWSEPHIGEAWEPAEPFEPQHADQIAEIYIEARREGRDFAQTAARIGAESLLPSGELGRLWQQDFQTAAKQIDTAVLNS
PKLPPLSYAIPSDGQILKGSLGNLYRCGQVFYAYGKPNAPQRIAFLLEHLIFCAVMPSEAETRQTFIVQSGETEILVEIA
QDRALQLLSEWMAFFNIGQNRPLPFFAKTSLATAEAFAQKQDWEAALKKAQTAYHGSKVSKGQKDYTEVALVFGNASQNP
LEQPLFENLVRLLADTLAAAEKKEEAGEA

Nucleotide


Download         Length: 0 bp        

>NTDB_id=305766 DV167_RS00005 WP_002251483.1 2236547..211(+) (recC) [Neisseria meningitidis strain M22425]

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(778-997)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

94.294

100

0.943

Multiple sequence alignment