Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   DV115_RS10315 Genome accession   NZ_CP031325
Coordinates   1832563..1833228 (+) Length   221 a.a.
NCBI ID   WP_003752754.1    Uniprot ID   -
Organism   Neisseria polysaccharea strain M18661     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1827563..1838228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV115_RS10285 cysW 1827717..1828577 (-) 861 WP_115437619.1 sulfate ABC transporter permease subunit CysW -
  DV115_RS10290 cysT 1828840..1829676 (-) 837 WP_003749890.1 sulfate ABC transporter permease subunit CysT -
  DV115_RS10295 - 1829861..1830193 (+) 333 WP_025456824.1 hypothetical protein -
  DV115_RS10300 - 1830258..1830839 (-) 582 WP_003752760.1 superoxide dismutase -
  DV115_RS10310 dnaB 1831002..1832408 (+) 1407 WP_003752757.1 replicative DNA helicase -
  DV115_RS10315 pilH 1832563..1833228 (+) 666 WP_003752754.1 GspH/FimT family pseudopilin Machinery gene
  DV115_RS10320 pilI 1833257..1833868 (+) 612 WP_003752752.1 type IV pilus modification protein PilV Machinery gene
  DV115_RS10325 pilJ 1833865..1834806 (+) 942 WP_003752750.1 PilW family protein Machinery gene
  DV115_RS10330 pilK 1834785..1835381 (+) 597 WP_003752748.1 pilus assembly PilX family protein Machinery gene
  DV115_RS10335 pilL 1835383..1835856 (+) 474 WP_025456823.1 PilX family type IV pilin Machinery gene
  DV115_RS10340 - 1835926..1836234 (-) 309 WP_003707454.1 AzlD family protein -
  DV115_RS10345 - 1836231..1836940 (-) 710 Protein_1778 AzlC family ABC transporter permease -
  DV115_RS10350 dut 1837083..1837535 (+) 453 WP_003752740.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24440.97 Da        Isoelectric Point: 9.4348

>NTDB_id=305661 DV115_RS10315 WP_003752754.1 1832563..1833228(+) (pilH) [Neisseria polysaccharea strain M18661]
MCTRKQQGFTLIELLIVMVIAAIMAMIALPSMSRWIASRRIVSHAEQVANLLRFSRGEAVRLNIPVYICPVQVKKDGTVN
NQCDFSKKGQGVLAFGDKNGNKAYDGDAADVFLRSVVLNDAADSRINYAFNHIAFGKSQPTADRVVWTFNQNGAFGYSPD
QNLARTSRFVYSDGYIQIVLTDAKAVSADEKKFRSAVVLIDSSGRVEVCPRNDTRAVCQHQ

Nucleotide


Download         Length: 666 bp        

>NTDB_id=305661 DV115_RS10315 WP_003752754.1 1832563..1833228(+) (pilH) [Neisseria polysaccharea strain M18661]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAATAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAGTATGAGCCGGTGGATTGCATCGCGCCGCATTGTCAGTCACGCGGAGCAGGTTGCAAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATATCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTACGGTCAAC
AATCAGTGCGACTTCAGTAAGAAGGGGCAGGGGGTGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACGGCGA
TGCGGCGGATGTTTTCCTCCGCAGTGTGGTGTTGAATGATGCCGCCGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTAAGTCTCAACCGACTGCCGACCGTGTTGTTTGGACTTTCAACCAAAACGGGGCATTCGGCTATTCTCCCGAT
CAGAATCTCGCGCGTACTTCCAGATTTGTTTACTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAAGGCGGTTTC
TGCCGATGAAAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTTGAGGTTTGTCCTAGAAACGATA
CGCGTGCCGTATGCCAACATCAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

85.455

99.548

0.851

Multiple sequence alignment