Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   DWB97_RS05755 Genome accession   NZ_CP031274
Coordinates   1153909..1156290 (+) Length   793 a.a.
NCBI ID   WP_145400812.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain 17A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1148909..1161290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWB97_RS11775 - 1149519..1149674 (+) 156 WP_165806095.1 hypothetical protein -
  DWB97_RS05735 (DWB97_05760) - 1149719..1150732 (-) 1014 WP_145400809.1 LLM class flavin-dependent oxidoreductase -
  DWB97_RS05740 (DWB97_05765) - 1150952..1152100 (+) 1149 WP_145401830.1 cysteine desulfurase family protein -
  DWB97_RS05745 (DWB97_05770) mnmA 1152097..1153209 (+) 1113 WP_145400810.1 tRNA 2-thiouridine(34) synthase MnmA -
  DWB97_RS05750 (DWB97_05775) - 1153232..1153906 (+) 675 WP_145400811.1 tetratricopeptide repeat protein -
  DWB97_RS05755 (DWB97_05780) recD2 1153909..1156290 (+) 2382 WP_145400812.1 ATP-dependent RecD-like DNA helicase Machinery gene
  DWB97_RS05760 (DWB97_05785) alaS 1156516..1159146 (+) 2631 WP_145400813.1 alanine--tRNA ligase -
  DWB97_RS05765 (DWB97_05790) - 1159208..1159480 (+) 273 WP_037574156.1 IreB family regulatory phosphoprotein -
  DWB97_RS05770 (DWB97_05795) ruvX 1159473..1159901 (+) 429 WP_037574153.1 Holliday junction resolvase RuvX -
  DWB97_RS05775 (DWB97_05800) - 1159916..1160230 (+) 315 WP_037574148.1 DUF1292 domain-containing protein -
  DWB97_RS05780 (DWB97_05805) - 1160611..1161255 (+) 645 WP_145400814.1 O-methyltransferase -

Sequence

Protein


Download         Length: 793 a.a.        Molecular weight: 89659.91 Da        Isoelectric Point: 4.6331

>NTDB_id=305324 DWB97_RS05755 WP_145400812.1 1153909..1156290(+) (recD2) [Staphylococcus chromogenes strain 17A]
MENPTLFEQSYVKGNIDVILFQNNDNYYTVLKVEVEDSNEDFDTTATIVGFFPNIVEGETYTFKGQITDHPKYGKQLKAE
TFQKVLPQTREAVIQYLSSELFKGVGKKTAESIVDTLGENAIQSILKDASVLEKVPKLSKTKQSQIADQVFQNQESEQIM
VRLNELGFGAKLAMDIYKFYKSDTLDILNQNPYQLVYDIRGVGFQKADQLANQMGISEHHPNRLKAGIQFVVEETCIKQG
HTYLPKETLVTESLQLLSKNSQVPIETTLIEEVLTQLVEENRLVDDQENIAIPSLYYSELKSAQNIYKMMQQQLHLEVFD
QSDIQMHIGEIEQKNNVSYAEAQKEALEAAMKHQIMILTGGPGTGKTTVIKGIVYLYAALHGISLDYDDYTEEDYPIVLA
APTGRASKRLHDATGLEAMTIHRLIGWNQETKPEDILDNEISAKLIIIDEMSMVDTWLFHQFMAAVPNDAQVVLVGDEDQ
LPSVGPGQVFKDLIASKTLPRINLTEVYRQQDGSSIIALAHRMKSGQSVDITERFHDRSFIPCHVDQIPEVVRKVVTNAV
SKGYDMSDIQVLAPMYRGNAGIHRLNKVLQEILNPLDTSEQREIQFGDVLFRKGDKVLQLVNRPNDNVFNGDIGVIVGVF
WAKENALNKDVVVVDFEGNEITYLKSDLTELTHAYCTSIHKAQGSEFPIVIMPIVKQYYRMLQKPILYTGLTRAKQSLVF
LGDADAFNLGLKTEGQVRLTREKSFLEQYFSTEEVQNENVELTEATMFQINPMINMENVTPYDFLEIDNAEKA

Nucleotide


Download         Length: 2382 bp        

>NTDB_id=305324 DWB97_RS05755 WP_145400812.1 1153909..1156290(+) (recD2) [Staphylococcus chromogenes strain 17A]
GTGGAAAACCCAACACTATTTGAGCAGTCGTATGTTAAAGGAAACATTGATGTCATCTTATTTCAAAATAACGACAATTA
TTACACAGTGCTCAAAGTTGAAGTTGAGGATTCTAATGAGGACTTTGATACGACGGCGACGATAGTTGGGTTTTTTCCAA
ATATTGTTGAAGGTGAAACTTATACGTTCAAGGGGCAAATCACTGATCACCCTAAGTATGGGAAACAACTAAAAGCTGAA
ACTTTCCAGAAAGTGCTTCCGCAAACGAGAGAAGCGGTAATTCAATATTTATCAAGTGAACTTTTCAAGGGCGTTGGTAA
AAAAACTGCAGAATCCATTGTAGATACGTTAGGTGAAAATGCAATTCAGTCGATTCTTAAAGATGCATCTGTTCTTGAAA
AGGTGCCCAAATTGTCAAAAACAAAGCAATCGCAAATCGCAGACCAAGTATTTCAAAATCAAGAAAGCGAACAAATTATG
GTGCGTCTGAATGAATTAGGGTTTGGTGCAAAACTTGCGATGGATATTTACAAGTTTTATAAAAGTGATACTTTAGACAT
TCTCAATCAAAATCCCTACCAACTTGTTTATGATATACGAGGCGTGGGCTTTCAAAAAGCAGACCAATTGGCAAATCAAA
TGGGCATTTCAGAACATCACCCCAATCGCTTAAAAGCAGGCATTCAATTTGTCGTTGAAGAAACCTGTATTAAACAGGGA
CACACTTACTTGCCTAAGGAAACTTTAGTGACTGAGTCATTGCAACTTCTTTCAAAAAATAGTCAGGTGCCTATCGAAAC
AACTTTAATTGAAGAAGTATTGACTCAGCTTGTAGAAGAAAACCGTCTCGTTGATGATCAAGAAAATATTGCAATTCCTA
GCCTTTATTATTCAGAATTAAAGAGTGCTCAAAATATTTATAAAATGATGCAACAACAACTGCACCTCGAAGTTTTTGAT
CAATCAGATATTCAGATGCATATTGGTGAAATCGAGCAAAAAAATAATGTATCTTATGCTGAGGCACAAAAAGAGGCATT
AGAAGCTGCGATGAAGCATCAAATAATGATTTTGACAGGTGGGCCTGGTACAGGTAAAACCACTGTAATAAAAGGGATTG
TTTATCTGTATGCTGCTTTACACGGGATTTCTTTAGATTACGATGACTATACCGAAGAAGATTATCCTATTGTTTTAGCA
GCACCGACGGGTCGGGCTTCGAAACGACTACACGATGCGACTGGCTTGGAGGCTATGACCATTCACCGTCTAATTGGTTG
GAATCAAGAAACCAAACCTGAAGATATATTGGATAATGAAATTTCTGCCAAACTTATTATTATAGATGAAATGTCAATGG
TCGATACTTGGTTGTTTCACCAATTTATGGCAGCAGTTCCTAATGATGCACAAGTTGTTTTGGTAGGTGATGAAGATCAA
CTCCCATCGGTTGGGCCTGGACAAGTGTTTAAAGATTTAATTGCCTCAAAAACACTCCCACGTATCAATTTAACAGAAGT
TTATCGTCAGCAAGATGGTTCAAGTATCATTGCGCTTGCGCATCGTATGAAATCAGGTCAATCTGTTGATATTACTGAAC
GGTTTCATGATCGTTCATTCATCCCTTGTCATGTCGATCAAATACCAGAAGTGGTTCGTAAAGTGGTAACAAATGCAGTT
TCAAAAGGATATGATATGTCTGATATACAAGTATTAGCTCCGATGTATCGAGGAAATGCAGGGATTCATCGACTGAATAA
AGTGCTTCAAGAAATACTGAACCCTTTGGATACATCTGAGCAACGTGAAATTCAGTTTGGTGATGTCTTGTTTCGAAAAG
GCGACAAGGTATTACAACTTGTCAATCGGCCAAATGACAATGTATTTAATGGCGATATCGGAGTTATTGTAGGTGTTTTT
TGGGCTAAGGAAAATGCGCTAAACAAAGACGTCGTTGTCGTGGACTTTGAGGGCAATGAAATTACTTATTTAAAATCAGA
TTTAACCGAGTTGACACATGCCTATTGCACATCAATTCATAAAGCACAAGGTTCAGAATTCCCGATCGTCATTATGCCTA
TTGTCAAACAATATTATAGAATGTTGCAAAAACCCATTTTATATACGGGTCTCACACGTGCGAAGCAATCATTAGTGTTT
TTAGGAGACGCGGATGCATTTAATCTCGGATTAAAAACAGAAGGCCAAGTAAGATTAACTCGTGAAAAAAGCTTTTTAGA
ACAATACTTTTCTACAGAAGAAGTACAAAATGAAAATGTTGAACTTACAGAAGCCACTATGTTTCAAATTAATCCTATGA
TTAATATGGAGAATGTGACGCCTTACGATTTTTTAGAAATTGACAACGCTGAAAAGGCTTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-656)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

AAA domain (AAA_30)

(339-544)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-720)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.239

99.369

0.489

Multiple sequence alignment