Detailed information NTG0305292

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: DWB96_RS06220
• Genome accession: NZ_CP031271
• Coordinates: 1296481..1298931 (+)
• Length: 816 a.a.
• NCBI ID: WP_044466735.1
• Uniprot ID: -
• Organism: Staphylococcus caprae strain 26D
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1291481..1303931

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DWB96_RS06190 (DWB96_06210)	-	1291780..1291962 (+)	183	WP_002443234.1	CsbD family protein	-
DWB96_RS06195 (DWB96_06215)	-	1291993..1292136 (+)	144	WP_002443232.1	SAS049 family protein	-
DWB96_RS06200 (DWB96_06220)	-	1292197..1293192 (-)	996	WP_002443230.1	LLM class flavin-dependent oxidoreductase	-
DWB96_RS06205 (DWB96_06225)	-	1293451..1294593 (+)	1143	WP_002443229.1	cysteine desulfurase family protein	-
DWB96_RS06210 (DWB96_06230)	mnmA	1294593..1295711 (+)	1119	WP_002443227.1	tRNA 2-thiouridine(34) synthase MnmA	-
DWB96_RS06215 (DWB96_06235)	-	1295808..1296479 (+)	672	WP_044466736.1	tetratricopeptide repeat protein	-
DWB96_RS06220 (DWB96_06240)	recD2	1296481..1298931 (+)	2451	WP_044466735.1	ATP-dependent RecD-like DNA helicase	Machinery gene
DWB96_RS06225 (DWB96_06245)	alaS	1299280..1301910 (+)	2631	WP_044466734.1	alanine--tRNA ligase	-
DWB96_RS06230 (DWB96_06250)	-	1301974..1302234 (+)	261	WP_002443220.1	IreB family regulatory phosphoprotein	-
DWB96_RS06235 (DWB96_06255)	ruvX	1302237..1302665 (+)	429	WP_002443217.1	Holliday junction resolvase RuvX	-
DWB96_RS06240 (DWB96_06260)	-	1302680..1303006 (+)	327	WP_002443216.1	DUF1292 domain-containing protein	-

Sequence

Protein

• Length: 816 a.a.
• Molecular weight: 92036.66 Da
• Isoelectric Point: 4.5038

>NTDB_id=305292 DWB96_RS06220 WP_044466735.1 1296481..1298931(+) (recD2) [Staphylococcus caprae strain 26D]
MSDPTLFDYSMIKGTVDAILFQNNDNFYTVLKVDTIETNESFDSMPTVVGFLPNVVEGDVYTFKGQVVEHPRYGKQLKAE
TFEKELPQTKDAIVSYLSSDLFKGIGKKTAQNIVNALGENAINDILNHPEILQKVPSLPKKKQQQIAEQISANQESEKIM
IRLHDLGFGPKLSMAIYQFYMSDTLKILDENPYQLVYDIKGIGFNKADQLARNIGIAANSPERLKAGLLYILEEECIKQG
HTYLPNSYVIDPTQEMLNDGTDVTIARETLEEMILQLSEEKKLILSDEQVSIPSLYYSELKSVQNLYRIKTNTTKLKEIE
QSDLQMHIGEIESYNKVNYAASQKEALETAMNSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYNEDDYPVVLA
APTGRASKRLQESTGLEAMTIHRLIGWNQETQPEDILDNEINARLIIIDEMSMVDTWLFHQFLSAVPLDAQIIFVGDEDQ
LPSVGPGQVFKDLIDSKTIPRVNLTEVYRQQDGSSIIDLAHRMKMGEPIDITQRFHDRSFINCTSDQIPDVVDKVVQSAV
SKGYNMSDIQVLAPMYKGNAGIKRLNQVLQSILNPKKDDSREIEFGDVVFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFW
AKENALNKDVLVVDFEGNEITFTRQDLLELTHAYCTSIHKSQGSEFPIVIMPIVKQYFRMLQRPILYTGLTRAKQSLVLL
GDPQAFEIGLNTKGQERLTQLNGLLTSYFGNHQVDNESADILTTENKIINNETLDEQEQAIIDESQKDIILSESTIFKID
PMINMGEMTPYDFAER

Nucleotide

• Length: 2451 bp

>NTDB_id=305292 DWB96_RS06220 WP_044466735.1 1296481..1298931(+) (recD2) [Staphylococcus caprae strain 26D]
ATGTCTGACCCTACACTATTTGATTATTCAATGATCAAAGGCACAGTAGATGCTATATTATTTCAAAATAATGATAACTT
CTATACAGTTCTTAAAGTAGACACTATTGAAACAAATGAATCATTTGATAGTATGCCAACAGTTGTAGGGTTTCTTCCAA
ATGTAGTTGAAGGAGACGTGTACACCTTTAAAGGGCAAGTTGTAGAGCATCCACGGTATGGTAAACAATTAAAAGCTGAA
ACCTTTGAAAAGGAATTGCCTCAAACAAAAGATGCCATTGTGAGTTATTTATCTAGTGATTTATTTAAAGGCATCGGTAA
AAAAACGGCACAGAATATCGTTAATGCATTAGGTGAGAACGCAATTAATGATATATTAAATCATCCTGAAATTTTGCAAA
AGGTGCCGAGTTTGCCTAAGAAAAAGCAACAGCAAATTGCTGAACAAATTAGTGCAAATCAAGAATCTGAGAAAATTATG
ATTCGATTACATGATTTAGGTTTCGGTCCAAAACTGTCGATGGCTATCTATCAATTCTATATGAGTGATACGCTTAAAAT
TTTGGACGAAAATCCTTATCAACTCGTTTATGATATTAAAGGAATCGGGTTTAATAAAGCTGACCAACTTGCACGTAATA
TTGGTATTGCTGCGAATTCACCTGAACGTTTGAAAGCGGGTTTGTTATATATACTTGAAGAAGAATGTATCAAACAGGGA
CACACATATCTTCCTAATTCATATGTCATTGATCCGACACAAGAGATGTTAAACGATGGTACTGATGTAACTATTGCTAG
AGAAACACTTGAAGAAATGATATTGCAACTTTCTGAAGAGAAAAAATTAATTCTGAGTGATGAACAAGTATCCATTCCAA
GCTTATATTATTCCGAACTGAAAAGTGTCCAAAATTTATATCGAATTAAGACAAACACAACAAAATTAAAAGAAATCGAA
CAATCTGATCTCCAAATGCATATTGGAGAAATAGAATCGTACAATAAAGTAAATTATGCCGCATCACAAAAAGAAGCACT
TGAAACAGCAATGAATTCGAAAGTAATGCTTCTAACGGGTGGTCCAGGTACAGGTAAAACGACTGTTATCAAAGGGATTG
TTGAACTTTATGCAGAAATTCATGGTTTATCCCTAGATTATGACGACTATAATGAAGATGATTACCCTGTGGTATTAGCT
GCTCCAACCGGACGTGCGTCCAAACGACTTCAAGAATCGACAGGTCTTGAAGCGATGACGATTCATAGACTTATTGGATG
GAATCAAGAGACACAACCTGAAGATATTTTAGACAATGAAATTAATGCACGATTAATCATTATAGATGAAATGTCTATGG
TTGATACGTGGCTTTTCCATCAATTTTTAAGCGCAGTTCCATTAGATGCACAAATCATATTTGTTGGAGATGAAGATCAG
CTTCCTTCAGTCGGCCCAGGTCAAGTATTCAAAGATCTTATTGATTCTAAAACAATCCCCCGTGTCAATTTAACTGAGGT
ATACCGTCAACAAGATGGCTCAAGTATTATCGATTTAGCGCATCGGATGAAGATGGGTGAGCCCATAGATATTACTCAAC
GGTTTCACGATCGTAGTTTTATTAACTGCACCTCTGACCAGATACCTGATGTCGTAGATAAAGTTGTTCAGAGTGCAGTG
AGTAAAGGTTATAATATGAGTGATATCCAAGTCCTTGCGCCAATGTATAAAGGGAATGCTGGTATTAAACGCCTTAACCA
AGTATTACAATCGATTTTAAATCCTAAAAAGGATGATAGTCGTGAAATTGAATTTGGTGATGTTGTTTTCAGAAAAGGCG
ATAAAGTACTTCAATTAGTGAATCGACCGAACGATAATATTTTCAACGGGGATATTGGTGTAATTGTAGGCATTTTCTGG
GCAAAAGAGAATGCTCTAAATAAAGATGTCTTAGTCGTGGATTTCGAAGGGAACGAAATTACGTTCACACGACAAGATTT
ACTAGAATTAACCCACGCCTATTGTACATCAATTCATAAATCGCAAGGTTCTGAATTCCCAATTGTTATTATGCCTATTG
TTAAACAATATTTCCGAATGTTACAGCGCCCAATTCTATACACAGGTTTAACACGTGCTAAGCAATCGCTTGTGTTACTG
GGTGATCCCCAAGCATTTGAAATTGGCTTGAACACGAAAGGCCAAGAACGTTTAACACAATTAAATGGCTTGCTTACCTC
TTATTTTGGTAATCATCAAGTTGATAATGAATCAGCTGACATTTTAACTACTGAAAATAAAATCATCAACAATGAAACGT
TGGATGAACAAGAACAAGCGATCATAGATGAATCTCAAAAAGATATAATATTAAGTGAATCGACGATATTTAAAATAGAC
CCAATGATAAATATGGGAGAAATGACACCTTACGACTTTGCAGAGCGTTGA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (339-545)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (672-720)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	49.692	99.632	0.495