Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | BAMMC406_RS13800 | Genome accession | NC_010551 |
| Coordinates | 3024145..3025305 (+) | Length | 386 a.a. |
| NCBI ID | WP_012364740.1 | Uniprot ID | B1YN59 |
| Organism | Burkholderia ambifaria MC40-6 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3019145..3030305
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BAMMC406_RS13770 (BamMC406_2721) | - | 3019759..3020367 (+) | 609 | WP_006753282.1 | 50S ribosomal protein L25/general stress protein Ctc | - |
| BAMMC406_RS13775 (BamMC406_2722) | pth | 3020497..3021096 (+) | 600 | WP_006760396.1 | aminoacyl-tRNA hydrolase | - |
| BAMMC406_RS13780 (BamMC406_2723) | hisC | 3021222..3022289 (+) | 1068 | WP_012364738.1 | histidinol-phosphate transaminase | - |
| BAMMC406_RS13785 (BamMC406_2724) | - | 3022394..3022660 (-) | 267 | WP_006760398.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| BAMMC406_RS13790 (BamMC406_2725) | coaD | 3022720..3023217 (-) | 498 | WP_006398238.1 | pantetheine-phosphate adenylyltransferase | - |
| BAMMC406_RS13795 (BamMC406_2726) | rsmD | 3023329..3023943 (-) | 615 | WP_012364739.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| BAMMC406_RS13800 (BamMC406_2727) | pilA | 3024145..3025305 (+) | 1161 | WP_012364740.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| BAMMC406_RS13805 (BamMC406_2728) | maiA | 3025417..3026061 (-) | 645 | WP_012364741.1 | maleylacetoacetate isomerase | - |
| BAMMC406_RS13810 (BamMC406_2729) | ybiB | 3026251..3027225 (+) | 975 | WP_041489956.1 | DNA-binding protein YbiB | - |
| BAMMC406_RS13815 (BamMC406_2730) | leuA | 3027631..3029277 (+) | 1647 | WP_012364743.1 | 2-isopropylmalate synthase | - |
| BAMMC406_RS13820 (BamMC406_2731) | - | 3029420..3029803 (-) | 384 | WP_011657982.1 | nuclear transport factor 2 family protein | - |
Sequence
Protein
Download Length: 386 a.a. Molecular weight: 41198.06 Da Isoelectric Point: 4.8762
>NTDB_id=30492 BAMMC406_RS13800 WP_012364740.1 3024145..3025305(+) (pilA) [Burkholderia ambifaria MC40-6]
MFSFFKRFKKTQESDSTESQSADALQPDEPSDAPAADARQAIEAPPPPAQPRPAAPAVVMTVTPTNDGSDDVVEAVEIVP
PPTQDASAKKSWLTRLKTGLAKTGSSITGVFVNTKIDEDLYEELEAALLMSDAGVDATEYLLGALREKVKTGRLTDPQQV
KSALHDLLVELLKPLEKSLMLGRAQPLVMMITGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERN
NVTVVQQESGDPAAVIFDAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTGQNAL
TQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAVEFADALFD
MFSFFKRFKKTQESDSTESQSADALQPDEPSDAPAADARQAIEAPPPPAQPRPAAPAVVMTVTPTNDGSDDVVEAVEIVP
PPTQDASAKKSWLTRLKTGLAKTGSSITGVFVNTKIDEDLYEELEAALLMSDAGVDATEYLLGALREKVKTGRLTDPQQV
KSALHDLLVELLKPLEKSLMLGRAQPLVMMITGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERN
NVTVVQQESGDPAAVIFDAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTGQNAL
TQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAVEFADALFD
Nucleotide
Download Length: 1161 bp
>NTDB_id=30492 BAMMC406_RS13800 WP_012364740.1 3024145..3025305(+) (pilA) [Burkholderia ambifaria MC40-6]
ATGTTCAGCTTCTTCAAACGATTCAAGAAAACGCAGGAGTCCGACTCCACGGAATCGCAATCGGCCGACGCGCTGCAACC
GGACGAGCCGTCCGACGCGCCCGCAGCCGATGCCCGTCAGGCGATCGAAGCCCCGCCCCCCCCCGCGCAACCGCGACCGG
CCGCGCCGGCCGTCGTGATGACGGTCACGCCGACCAACGACGGTAGCGACGACGTCGTCGAAGCGGTCGAGATCGTGCCG
CCGCCGACGCAGGACGCCTCCGCGAAGAAATCGTGGCTCACCCGCCTGAAAACGGGGCTCGCGAAGACGGGTTCGAGCAT
CACCGGCGTGTTCGTCAACACGAAGATCGACGAGGATCTGTACGAGGAACTCGAAGCCGCGCTGCTGATGTCCGACGCCG
GCGTCGATGCGACCGAGTACCTGCTCGGGGCGCTGCGCGAGAAAGTGAAAACGGGCCGGCTGACCGATCCGCAGCAAGTG
AAGAGCGCGCTGCACGACCTGCTCGTCGAACTGCTGAAGCCGCTCGAGAAATCGCTGATGCTCGGCCGCGCGCAGCCGCT
CGTGATGATGATCACGGGCGTGAACGGCGCGGGCAAGACCACCAGCATCGGCAAGCTCGCGAAGCATCTGCAGAGCTTCG
ACCAGTCGGTGCTGCTGGCCGCGGGCGACACGTTCCGCGCGGCCGCGCGCGAGCAGCTGGCGGTCTGGGGCGAACGCAAC
AACGTGACGGTCGTCCAGCAGGAAAGCGGTGACCCGGCCGCGGTGATTTTCGACGCGGTCAGCGCCGCGCGCGCGCGCAA
GATCGACGTGATGATGGCCGACACGGCCGGCCGCCTGCCGACGCAGCTGCACCTGATGGAAGAGCTGAAGAAGGTGAAGC
GCGTGATCTCGAAGGCGCACGACGGCGCGCCGCACGAGGTGCTGCTCGTGATCGACGCGAACACCGGCCAGAACGCGCTC
ACGCAGGTGAAGGCCTTCGACGATGCGCTCGGCCTCACGGGCCTGATCGTCACGAAGCTCGACGGCACCGCCAAGGGCGG
GATTCTCGCCGCGATCGCGCGGCAGCGCCCGGTGCCCGTCTACTTCATCGGCGTCGGCGAGAAGGTCGAGGACCTGCAGC
CGTTCAGCGCCGTCGAATTCGCGGACGCGCTATTCGACTGA
ATGTTCAGCTTCTTCAAACGATTCAAGAAAACGCAGGAGTCCGACTCCACGGAATCGCAATCGGCCGACGCGCTGCAACC
GGACGAGCCGTCCGACGCGCCCGCAGCCGATGCCCGTCAGGCGATCGAAGCCCCGCCCCCCCCCGCGCAACCGCGACCGG
CCGCGCCGGCCGTCGTGATGACGGTCACGCCGACCAACGACGGTAGCGACGACGTCGTCGAAGCGGTCGAGATCGTGCCG
CCGCCGACGCAGGACGCCTCCGCGAAGAAATCGTGGCTCACCCGCCTGAAAACGGGGCTCGCGAAGACGGGTTCGAGCAT
CACCGGCGTGTTCGTCAACACGAAGATCGACGAGGATCTGTACGAGGAACTCGAAGCCGCGCTGCTGATGTCCGACGCCG
GCGTCGATGCGACCGAGTACCTGCTCGGGGCGCTGCGCGAGAAAGTGAAAACGGGCCGGCTGACCGATCCGCAGCAAGTG
AAGAGCGCGCTGCACGACCTGCTCGTCGAACTGCTGAAGCCGCTCGAGAAATCGCTGATGCTCGGCCGCGCGCAGCCGCT
CGTGATGATGATCACGGGCGTGAACGGCGCGGGCAAGACCACCAGCATCGGCAAGCTCGCGAAGCATCTGCAGAGCTTCG
ACCAGTCGGTGCTGCTGGCCGCGGGCGACACGTTCCGCGCGGCCGCGCGCGAGCAGCTGGCGGTCTGGGGCGAACGCAAC
AACGTGACGGTCGTCCAGCAGGAAAGCGGTGACCCGGCCGCGGTGATTTTCGACGCGGTCAGCGCCGCGCGCGCGCGCAA
GATCGACGTGATGATGGCCGACACGGCCGGCCGCCTGCCGACGCAGCTGCACCTGATGGAAGAGCTGAAGAAGGTGAAGC
GCGTGATCTCGAAGGCGCACGACGGCGCGCCGCACGAGGTGCTGCTCGTGATCGACGCGAACACCGGCCAGAACGCGCTC
ACGCAGGTGAAGGCCTTCGACGATGCGCTCGGCCTCACGGGCCTGATCGTCACGAAGCTCGACGGCACCGCCAAGGGCGG
GATTCTCGCCGCGATCGCGCGGCAGCGCCCGGTGCCCGTCTACTTCATCGGCGTCGGCGAGAAGGTCGAGGACCTGCAGC
CGTTCAGCGCCGTCGAATTCGCGGACGCGCTATTCGACTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
52.506 |
100 |
0.57 |