Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EW647_RS17340 Genome accession   NZ_CP035767
Coordinates   3397035..3397550 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli O145 strain RM12522-C8     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3392035..3402550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW647_RS17320 (EW647_17865) emrA 3392185..3393357 (+) 1173 WP_001400789.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  EW647_RS17325 (EW647_17870) emrB 3393374..3394912 (+) 1539 WP_001400788.1 multidrug efflux MFS transporter permease subunit EmrB -
  EW647_RS17330 (EW647_17875) - 3395170..3395877 (+) 708 WP_001097117.1 RNA ligase family protein -
  EW647_RS17335 (EW647_17880) - 3395874..3396986 (+) 1113 Protein_3353 AAA family ATPase -
  EW647_RS17340 (EW647_17885) luxS 3397035..3397550 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  EW647_RS17345 (EW647_17890) gshA 3397700..3399256 (-) 1557 WP_000611829.1 glutamate--cysteine ligase -
  EW647_RS17350 (EW647_17895) yqaA 3399329..3399757 (-) 429 WP_001287453.1 YqaA family protein -
  EW647_RS17355 (EW647_17900) yqaB 3399754..3400320 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  EW647_RS17380 (EW647_17925) csrA 3401639..3401824 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=304667 EW647_RS17340 WP_001130211.1 3397035..3397550(-) (luxS) [Escherichia coli O145 strain RM12522-C8]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=304667 EW647_RS17340 WP_001130211.1 3397035..3397550(-) (luxS) [Escherichia coli O145 strain RM12522-C8]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment