Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DV119_RS11670 Genome accession   NZ_CP031245
Coordinates   193334..194365 (-) Length   343 a.a.
NCBI ID   WP_050221175.1    Uniprot ID   A0AA44MYL7
Organism   Streptococcus pneumoniae strain M16808     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 188334..199365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV119_RS01125 - 188425..189186 (-) 762 WP_001107757.1 SDR family oxidoreductase -
  DV119_RS01130 ytpR 189219..189845 (-) 627 WP_000578285.1 YtpR family tRNA-binding protein -
  DV119_RS01135 - 189861..190178 (-) 318 WP_000615776.1 thioredoxin family protein -
  DV119_RS01140 - 190175..190474 (-) 300 WP_001818001.1 DUF4651 domain-containing protein -
  DV119_RS11980 - 190568..190699 (+) 132 WP_001811306.1 hypothetical protein -
  DV119_RS12135 - 190811..191006 (-) 196 Protein_194 cell wall-binding protein -
  DV119_RS01150 - 191167..191841 (-) 675 WP_000725720.1 LiaF transmembrane domain-containing protein -
  DV119_RS01155 - 191846..192292 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  DV119_RS01160 - 192406..192909 (-) 504 WP_050221177.1 phosphatase PAP2 family protein -
  DV119_RS01165 - 192906..193268 (-) 363 WP_050221176.1 DUF2200 domain-containing protein -
  DV119_RS11670 rcrQ 193334..194365 (-) 1032 WP_050221175.1 ABC transporter ATP-binding protein Regulator
  DV119_RS11675 - 194372..195193 (-) 822 Protein_200 ABC transporter permease -
  DV119_RS01175 - 195209..195679 (-) 471 WP_000517879.1 MarR family winged helix-turn-helix transcriptional regulator -
  DV119_RS01185 - 195803..196519 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  DV119_RS01195 ply 197400..198815 (-) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  DV119_RS01200 - 198826..199236 (-) 411 WP_000595757.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37906.19 Da        Isoelectric Point: 4.5650

>NTDB_id=304663 DV119_RS11670 WP_050221175.1 193334..194365(-) (rcrQ) [Streptococcus pneumoniae strain M16808]
MGFLLMGALFIVLPRTMVSAKRINQVLDLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTV
AFIGSTGSGKSTLVNLIPRFYDVSAGEILVDGVNVQDYDFSATAHAGQKVAIVGPTGAGKTTIVNLLMKFYEIDKGSIRI
DGVDTKAMTRSEVHDAFSMVLQDTWLFKGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVG
QKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNYEE
LMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=304663 DV119_RS11670 WP_050221175.1 193334..194365(-) (rcrQ) [Streptococcus pneumoniae strain M16808]
ATGGGCTTCCTTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
AGATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTGCAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGACAGCTCATGCTGGTCAAAAGGTTGCCATTGTTG
GGCCGACTGGGGCTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGGGAAGTATTCGCATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTT
TAAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTG
TGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAGGA
CAAAAACAACTATTGACTATTGCTCGTGCCCTTCTTAAGGATGCACCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGATACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATCCTTTGTCATTGCCCACC
GCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAA
CTGATGGCGCAAGGTGGATTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(68-118)

ABC transporter (ABC_tran)

(120-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

80.804

65.306

0.528
  rcrP Streptococcus mutans UA159

37.861

100

0.382

Multiple sequence alignment