Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   EPB54_RS01100 Genome accession   NZ_CP035701
Coordinates   198336..199061 (-) Length   241 a.a.
NCBI ID   WP_031777516.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2012AW-0154     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 193336..204061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB54_RS01075 - 194455..194946 (+) 492 WP_025505527.1 type II secretion system protein M -
  EPB54_RS01080 - 194948..195709 (+) 762 WP_029855938.1 type II secretion system protein N -
  EPB54_RS01085 cysQ 195995..196822 (-) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  EPB54_RS01090 nudE 196864..197433 (-) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  EPB54_RS01095 nfuA 197654..198238 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  EPB54_RS01100 comF 198336..199061 (-) 726 WP_031777516.1 amidophosphoribosyltransferase Machinery gene
  EPB54_RS01105 bioH 199146..199913 (+) 768 WP_029785296.1 pimeloyl-ACP methyl ester esterase BioH -
  EPB54_RS01110 - 200037..200501 (+) 465 WP_005459035.1 hypothetical protein -
  EPB54_RS01115 - 200635..202956 (-) 2322 WP_154119461.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27750.91 Da        Isoelectric Point: 8.9991

>NTDB_id=304204 EPB54_RS01100 WP_031777516.1 198336..199061(-) (comF) [Vibrio parahaemolyticus strain 2012AW-0154]
MLSHHWQNIMHRVLSSQCGLCRFPIQATAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIIDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=304204 EPB54_RS01100 WP_031777516.1 198336..199061(-) (comF) [Vibrio parahaemolyticus strain 2012AW-0154]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TACCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAACGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCATAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

48.739

98.755

0.481