Detailed information
Bioinformatically predicted
Overview
| Name | pilE | Type | Machinery gene |
| Locus tag | HYN46_RS00575 | Genome accession | NZ_CP031222 |
| Coordinates | 126562..127011 (+) | Length | 149 a.a. |
| NCBI ID | WP_114897632.1 | Uniprot ID | A0A345P2L3 |
| Organism | Aquirhabdus parva strain HYN0046 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 121562..132011
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HYN46_RS00565 (HYN46_00565) | - | 121988..125944 (+) | 3957 | WP_114897631.1 | pilus assembly protein PilY | - |
| HYN46_RS00570 (HYN46_00570) | - | 125946..126524 (+) | 579 | WP_114900492.1 | type IV pilin protein | - |
| HYN46_RS00575 (HYN46_00575) | pilE | 126562..127011 (+) | 450 | WP_114897632.1 | type IV pilin protein | Machinery gene |
| HYN46_RS00580 (HYN46_00580) | rpsP | 127196..127462 (+) | 267 | WP_114897633.1 | 30S ribosomal protein S16 | - |
| HYN46_RS00585 (HYN46_00585) | rimM | 127558..128133 (+) | 576 | WP_114897634.1 | ribosome maturation factor RimM | - |
| HYN46_RS00590 (HYN46_00590) | trmD | 128199..128984 (+) | 786 | WP_114897635.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| HYN46_RS00595 (HYN46_00595) | rplS | 129241..129636 (+) | 396 | WP_114897636.1 | 50S ribosomal protein L19 | - |
| HYN46_RS00600 (HYN46_00600) | - | 129823..130776 (+) | 954 | WP_114897637.1 | polyprenyl synthetase family protein | - |
| HYN46_RS00605 (HYN46_00605) | - | 130815..131516 (-) | 702 | WP_114897638.1 | PepSY-associated TM helix domain-containing protein | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 16116.38 Da Isoelectric Point: 8.9313
>NTDB_id=304154 HYN46_RS00575 WP_114897632.1 126562..127011(+) (pilE) [Aquirhabdus parva strain HYN0046]
MSKKKNGFTLIELMLVVAVIGVLAAIALPMYQQYVIRENRTETQAAMIQIAQRLAAYKLVNNDYNTTLSNSAIYGFSGYP
ATSRPYYTFTLDTTTVVGGWTLTATPVAGTRQSGDGAILLNDQGQRCWTKTATPCTLSATSGWDIGSTT
MSKKKNGFTLIELMLVVAVIGVLAAIALPMYQQYVIRENRTETQAAMIQIAQRLAAYKLVNNDYNTTLSNSAIYGFSGYP
ATSRPYYTFTLDTTTVVGGWTLTATPVAGTRQSGDGAILLNDQGQRCWTKTATPCTLSATSGWDIGSTT
Nucleotide
Download Length: 450 bp
>NTDB_id=304154 HYN46_RS00575 WP_114897632.1 126562..127011(+) (pilE) [Aquirhabdus parva strain HYN0046]
ATGAGTAAAAAAAAGAATGGTTTTACCTTAATCGAGCTTATGCTTGTTGTTGCCGTCATTGGTGTGCTTGCGGCTATAGC
TCTGCCTATGTATCAACAATATGTCATTCGTGAGAATCGTACCGAAACTCAAGCGGCAATGATTCAGATTGCACAACGTT
TGGCGGCCTATAAGCTGGTTAATAACGACTATAATACCACCTTGTCAAATAGTGCGATCTATGGCTTTAGTGGATATCCA
GCGACAAGCCGACCTTATTATACTTTCACACTGGATACGACGACGGTCGTAGGTGGATGGACGTTAACGGCAACTCCCGT
GGCAGGCACGCGGCAATCGGGTGACGGTGCGATTCTATTAAATGATCAGGGGCAGCGCTGTTGGACCAAAACAGCAACGC
CTTGTACGCTGAGCGCCACTTCAGGATGGGATATTGGCTCTACGACTTAA
ATGAGTAAAAAAAAGAATGGTTTTACCTTAATCGAGCTTATGCTTGTTGTTGCCGTCATTGGTGTGCTTGCGGCTATAGC
TCTGCCTATGTATCAACAATATGTCATTCGTGAGAATCGTACCGAAACTCAAGCGGCAATGATTCAGATTGCACAACGTT
TGGCGGCCTATAAGCTGGTTAATAACGACTATAATACCACCTTGTCAAATAGTGCGATCTATGGCTTTAGTGGATATCCA
GCGACAAGCCGACCTTATTATACTTTCACACTGGATACGACGACGGTCGTAGGTGGATGGACGTTAACGGCAACTCCCGT
GGCAGGCACGCGGCAATCGGGTGACGGTGCGATTCTATTAAATGATCAGGGGCAGCGCTGTTGGACCAAAACAGCAACGC
CTTGTACGCTGAGCGCCACTTCAGGATGGGATATTGGCTCTACGACTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilE | Acinetobacter baumannii D1279779 |
51.799 |
93.289 |
0.483 |
| comF | Acinetobacter baylyi ADP1 |
46.897 |
97.315 |
0.456 |