Detailed information NTG0304010

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: DV527_RS06240
• Genome accession: NZ_CP031196
• Coordinates: 1268071..1270455 (+)
• Length: 794 a.a.
• NCBI ID: WP_145437534.1
• Uniprot ID: -
• Organism: Staphylococcus saprophyticus strain 1A
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1263071..1275455

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DV527_RS06220 (DV527_06235)	sal	1263320..1264951 (+)	1632	WP_075339788.1	Sal family ABC-F type ribosomal protection protein	-
DV527_RS06225 (DV527_06240)	-	1265012..1266154 (+)	1143	WP_002483116.1	cysteine desulfurase family protein	-
DV527_RS06230 (DV527_06245)	mnmA	1266155..1267267 (+)	1113	WP_002483117.1	tRNA 2-thiouridine(34) synthase MnmA	-
DV527_RS06235 (DV527_06250)	-	1267402..1268067 (+)	666	WP_069822034.1	tetratricopeptide repeat protein	-
DV527_RS06240 (DV527_06255)	recD2	1268071..1270455 (+)	2385	WP_145437534.1	ATP-dependent RecD-like DNA helicase	Machinery gene
DV527_RS06245 (DV527_06260)	alaS	1270804..1273434 (+)	2631	WP_129334887.1	alanine--tRNA ligase	-
DV527_RS06250 (DV527_06265)	-	1273504..1273764 (+)	261	WP_002483121.1	IreB family regulatory phosphoprotein	-
DV527_RS06255 (DV527_06270)	ruvX	1273768..1274196 (+)	429	WP_011302969.1	Holliday junction resolvase RuvX	-
DV527_RS06260 (DV527_06275)	-	1274213..1274545 (+)	333	WP_002483123.1	DUF1292 domain-containing protein	-

Sequence

Protein

• Length: 794 a.a.
• Molecular weight: 89329.97 Da
• Isoelectric Point: 4.5814

>NTDB_id=304010 DV527_RS06240 WP_145437534.1 1268071..1270455(+) (recD2) [Staphylococcus saprophyticus strain 1A]
MGDPTLFNNSMIKGTVDAILFQNKENFYTVLKVDTIESSETFDSMPTIVGFFPEIAEGDVYTFKGQVVTHPKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGENAISDILNDPSVLEQVPGLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQAYLGETLNVVANKPYQLVYDVKGIGFNKADTLARNVGIQFNDTERLKAGLLYVLEEECIKQG
HTYLPTQNVLEMTQDMLSQAPSEIIEMQQLNHVLQELVNDTKLIQQENEVAIPSLYYSELKSVQNLYRNYAYTNKLKQIE
QSDLLMKIGEIEERNQVNYANSQKDALQTAINSKIMLLTGGPGTGKTTVIKGIVELYAEIHGLSLNYDDYQNDDYPVVLG
APTGRASKRLAESTGLEAMTIHRLIGWNQDTQPEDILDNEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQIILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGEPIDITQRFHDRNFINCNTDQIPTVVEKVVSSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNMVLQDILNPKDKDTREIEFGDVFFRKGDKVLQLVNRPNDNIFNGDIGVIVGVFW
AKENALNKDVLVVDFEGNEITFVRQDLIELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQALVFL
GDPQAFDIGLKTHGQVRMTQLCTFLKAYFNNDASTEEEISDTFDADIILTEDNIFKINPMINMGDISPYDFVED

Nucleotide

• Length: 2385 bp

>NTDB_id=304010 DV527_RS06240 WP_145437534.1 1268071..1270455(+) (recD2) [Staphylococcus saprophyticus strain 1A]
ATGGGAGACCCTACACTATTTAATAATTCAATGATTAAAGGAACCGTTGATGCGATTTTATTTCAAAATAAAGAAAATTT
TTATACGGTTTTAAAAGTTGATACAATTGAGTCAAGTGAAACATTTGATTCAATGCCTACGATTGTAGGGTTTTTCCCAG
AAATTGCTGAAGGTGATGTTTATACATTCAAAGGCCAAGTTGTTACACATCCGAAGTATGGTAAACAACTTAAAGCTGAA
ACGTTTGAAAAAGAATTACCACAAACTAAAGAGGCAATTATTAGTTATTTATCAAGTGATTTATTTAAAGGTATTGGTAA
AAAAACTGCGCAAAGTATTGTTAATAAACTAGGTGAAAATGCTATAAGCGATATCTTGAATGACCCGTCGGTATTAGAGC
AAGTACCTGGTTTACCTAAGAAAAAGCAAAAACAAATTGCTGAACAAATTGCTAGTAATCAAGAGACGGAGCAAATTATC
ATACGCTTACATGATTTAGGGTTTGGACCAAAACTAGCTATGGCGATTTACCAAGCGTATTTAGGAGAAACACTTAATGT
TGTTGCAAATAAACCCTACCAACTCGTATATGATGTAAAAGGAATTGGATTTAATAAAGCTGATACCTTAGCACGAAATG
TTGGAATCCAGTTCAATGATACAGAAAGACTAAAAGCGGGTTTGTTATATGTACTTGAAGAGGAATGTATTAAGCAAGGA
CATACATATTTACCTACTCAAAATGTATTAGAAATGACTCAAGATATGCTTTCTCAAGCACCTAGTGAAATAATAGAAAT
GCAACAATTGAATCATGTATTACAAGAATTGGTAAATGATACCAAACTCATTCAACAAGAAAATGAAGTTGCAATTCCGA
GTTTATATTATTCAGAATTAAAAAGTGTGCAGAATCTTTATCGCAATTATGCGTATACGAATAAACTCAAACAAATAGAA
CAGTCTGATCTTTTAATGAAGATTGGAGAAATTGAAGAGCGCAATCAAGTTAATTATGCAAATTCACAAAAAGATGCGTT
ACAGACTGCTATTAATTCTAAAATTATGTTACTCACAGGTGGTCCTGGTACAGGTAAAACAACTGTGATAAAAGGTATTG
TAGAATTATATGCAGAAATTCATGGTCTCTCATTAAATTATGATGATTATCAAAATGATGATTATCCAGTCGTATTAGGT
GCGCCTACAGGAAGAGCTTCAAAGCGTTTGGCAGAGTCGACAGGTTTAGAAGCCATGACAATTCATCGCTTAATCGGATG
GAATCAGGATACACAACCGGAAGATATTTTAGATAATGAAATATCAGCAAAATTAATTATCATTGATGAGATGTCTATGG
TTGATACATGGCTGTTCCACCAATTTTTAAGTGCAGTTCCAATAGATGCACAAATCATTTTAGTAGGTGATGAAGATCAA
TTGCCTTCTGTAGGTCCTGGTCAAGTATTTAAAGATTTAATTGATTCAAAAGTGATTCCTCGTGTTAATTTAACAGAAGT
TTATAGACAACAAGATGGTTCTAGTATTATTGAATTAGCGCATCGGATGAAACTAGGTGAACCGATTGATATAACCCAAC
GTTTTCATGATCGAAATTTTATAAATTGTAATACAGATCAGATTCCGACAGTTGTGGAAAAAGTTGTTTCAAGCGCTGTG
AATAAAGGCTATGATATGAGTGATATTCAAGTGCTTGCACCAATGTATAAAGGGTCAGCAGGCATAAAAAAACTTAATAT
GGTATTACAAGATATTTTAAATCCTAAGGATAAAGATACACGTGAAATAGAATTTGGTGATGTGTTTTTTAGAAAAGGTG
ACAAAGTCTTGCAACTTGTAAATAGGCCTAATGATAATATTTTCAACGGTGATATTGGTGTAATCGTGGGTGTTTTTTGG
GCAAAAGAAAATGCGTTGAACAAAGATGTATTAGTCGTTGATTTTGAAGGTAATGAAATTACTTTTGTTCGTCAAGATTT
AATAGAATTAACTCATGCTTATTGTACGTCGATTCATAAATCACAAGGTTCTGAATTCCCAATAGTCATCATGCCTATGG
TAAAACAATACTTTAGAATGCTACAAAAGCCCATATTATATACTGGCTTAACAAGGGCTAAACAAGCCCTTGTCTTTTTA
GGTGATCCGCAAGCCTTTGATATTGGTTTAAAAACGCATGGACAAGTGAGAATGACACAGTTATGCACATTTTTAAAAGC
CTACTTTAATAACGATGCATCTACTGAAGAAGAAATCAGCGACACATTTGATGCTGATATCATTCTAACTGAAGACAATA
TTTTTAAAATTAACCCAATGATTAATATGGGAGATATTTCCCCATATGACTTCGTTGAAGATTGA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (339-545)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (672-719)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

• Helix-hairpin-helix domain (HHH_5) (103-149)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	51.008	100	0.51