Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   HSM_RS00700 Genome accession   NC_010519
Coordinates   146488..147015 (+) Length   175 a.a.
NCBI ID   WP_011608418.1    Uniprot ID   A0A9Q6P3A6
Organism   Histophilus somni 2336     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 141488..152015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSM_RS00660 (HSM_0132) tolQ 141769..142452 (+) 684 WP_012340477.1 protein TolQ -
  HSM_RS00665 (HSM_0133) tolR 142520..142942 (+) 423 WP_011608414.1 colicin uptake protein TolR -
  HSM_RS00670 (HSM_0134) tolA 142961..144016 (+) 1056 WP_012340495.1 cell envelope integrity protein TolA -
  HSM_RS00675 (HSM_0135) tolB 144044..145348 (+) 1305 WP_012340504.1 Tol-Pal system beta propeller repeat protein TolB -
  HSM_RS00680 (HSM_0136) pal 145358..145813 (+) 456 WP_012340512.1 peptidoglycan-associated lipoprotein Pal -
  HSM_RS00700 (HSM_0137) comN 146488..147015 (+) 528 WP_011608418.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  HSM_RS00705 (HSM_0138) - 147064..147741 (+) 678 WP_080514398.1 type II secretion system protein J -
  HSM_RS00710 (HSM_0139) - 147744..148424 (+) 681 WP_011608420.1 DUF2572 family protein -
  HSM_RS00715 (HSM_0140) - 148405..148722 (+) 318 WP_012340547.1 DUF5374 domain-containing protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 20468.96 Da        Isoelectric Point: 9.6079

>NTDB_id=30390 HSM_RS00700 WP_011608418.1 146488..147015(+) (comN) [Histophilus somni 2336]
MKALKGFTLLEILIVLLIISMTVTFSFPMWQTANTKMILEKEQNKLYIFIRELQARVENSNDIWFLIANRDLVSKRWCLV
AQPKNTDICDCLNPRSCNRNIPMKFYYPYFADKTMLISKVYYPREMTRLNGTRNTSTTTCFVLQSDQQRTVFSFFNVGSL
KLKGYQSLSACVNDH

Nucleotide


Download         Length: 528 bp        

>NTDB_id=30390 HSM_RS00700 WP_011608418.1 146488..147015(+) (comN) [Histophilus somni 2336]
ATGAAAGCATTAAAGGGGTTTACTCTATTAGAAATATTGATTGTTTTACTGATTATCAGTATGACAGTAACATTTTCTTT
TCCCATGTGGCAAACAGCAAATACAAAAATGATTTTAGAAAAAGAGCAAAATAAACTCTATATTTTCATAAGGGAGCTAC
AAGCTCGAGTTGAAAATTCTAATGATATTTGGTTTTTAATTGCTAATCGTGATTTAGTGAGTAAGCGTTGGTGCCTGGTT
GCACAACCAAAAAACACAGATATATGTGATTGTTTAAATCCTCGCAGCTGTAATAGAAATATTCCGATGAAATTTTATTA
TCCTTATTTTGCAGATAAAACCATGTTAATCAGCAAAGTTTATTATCCTAGAGAAATGACTAGATTAAATGGTACAAGGA
ATACAAGTACGACGACTTGTTTTGTGTTGCAATCTGATCAGCAAAGAACAGTATTTTCGTTTTTTAATGTAGGATCTTTA
AAACTTAAAGGTTACCAATCGTTAAGTGCTTGCGTGAATGATCATTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

53.293

95.429

0.509

Multiple sequence alignment