Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DVJ83_RS11900 Genome accession   NZ_CP031158
Coordinates   2365672..2366271 (+) Length   199 a.a.
NCBI ID   WP_114672487.1    Uniprot ID   A0A345IJ39
Organism   Deinococcus wulumuqiensis strain NEB 479     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2360672..2371271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVJ83_RS11875 (DVJ83_11870) - 2361500..2362411 (-) 912 WP_240319280.1 ABC transporter permease -
  DVJ83_RS11880 (DVJ83_11875) - 2362408..2363289 (-) 882 WP_240319282.1 ABC transporter permease -
  DVJ83_RS11885 (DVJ83_11880) - 2363606..2364403 (+) 798 WP_114672486.1 DUF937 domain-containing protein -
  DVJ83_RS11890 (DVJ83_11885) - 2364559..2365020 (-) 462 WP_017869693.1 Lrp/AsnC family transcriptional regulator -
  DVJ83_RS11895 (DVJ83_11890) - 2365140..2365430 (+) 291 WP_017869694.1 YbaB/EbfC family nucleoid-associated protein -
  DVJ83_RS11900 (DVJ83_11895) recR 2365672..2366271 (+) 600 WP_114672487.1 recombination mediator RecR Machinery gene
  DVJ83_RS11905 (DVJ83_11900) - 2366421..2367032 (+) 612 WP_114672488.1 GNAT family N-acetyltransferase -
  DVJ83_RS11910 (DVJ83_11905) - 2367564..2369483 (+) 1920 WP_114672489.1 chorismate-binding protein -
  DVJ83_RS11915 (DVJ83_11910) - 2369484..2370188 (+) 705 WP_114672490.1 aminotransferase class IV -
  DVJ83_RS11920 (DVJ83_11915) - 2370348..2371043 (+) 696 WP_162865550.1 zinc metallopeptidase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21817.20 Da        Isoelectric Point: 6.3346

>NTDB_id=303815 DVJ83_RS11900 WP_114672487.1 2365672..2366271(+) (recR) [Deinococcus wulumuqiensis strain NEB 479]
MKYPPSLVSLIRELSRLPGIGPKSAQRLAFHLFEQPREDIERLASALLEAKRDLHVCPICFNITDAEKCDVCADTSRDQR
TICVVEEPGDVIAIERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRVQSGMEVILATGTTVEGDATALYLQRLLEP
LGADISRIAYGVPVGGSLEYTDEVTLGRALMGRQKVSRT

Nucleotide


Download         Length: 600 bp        

>NTDB_id=303815 DVJ83_RS11900 WP_114672487.1 2365672..2366271(+) (recR) [Deinococcus wulumuqiensis strain NEB 479]
ATGAAATATCCTCCTTCCCTCGTTTCGCTCATCCGTGAACTCTCGCGCTTGCCGGGCATCGGCCCCAAGAGTGCGCAGCG
GCTCGCCTTTCACCTGTTCGAGCAGCCGCGTGAGGACATCGAGCGCCTCGCTTCGGCGCTGCTGGAAGCCAAACGTGACC
TGCACGTCTGCCCCATCTGCTTCAACATCACCGACGCCGAGAAATGCGACGTGTGCGCCGACACCAGCCGCGACCAGCGG
ACCATCTGCGTGGTGGAAGAACCCGGCGACGTCATCGCCATCGAGCGCAGCGGCGAGTACCGGGGCCTGTACCACGTCCT
GCACGGCGTCCTGAGTCCGATGAACGGCGTCGGCCCCGACAAGCTGCACATCAAGCCGCTGCTGCCGCGTGTGCAAAGCG
GCATGGAAGTGATTCTGGCGACGGGCACGACGGTGGAAGGCGACGCCACCGCGCTTTACCTTCAGCGCCTGCTCGAACCG
CTGGGGGCTGACATCAGCCGCATCGCCTACGGGGTGCCGGTGGGCGGCTCGCTGGAATACACCGACGAGGTGACGCTGGG
CCGCGCCCTGATGGGCCGCCAGAAGGTGAGCCGGACCTGA

Domains

Predicted by InterproScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(81-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345IJ39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

95.96

99.497

0.955

Multiple sequence alignment