Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   DVJ83_RS07445 Genome accession   NZ_CP031158
Coordinates   1502614..1504626 (-) Length   670 a.a.
NCBI ID   WP_114671921.1    Uniprot ID   A0A345IH51
Organism   Deinococcus wulumuqiensis strain NEB 479     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1497614..1509626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVJ83_RS07415 (DVJ83_07410) - 1497953..1498226 (-) 274 Protein_1411 hypothetical protein -
  DVJ83_RS07420 (DVJ83_07415) - 1498249..1499100 (-) 852 WP_114671918.1 alpha/beta hydrolase -
  DVJ83_RS07425 (DVJ83_07420) aroQ 1499097..1499528 (-) 432 WP_017870526.1 type II 3-dehydroquinate dehydratase -
  DVJ83_RS07430 (DVJ83_07425) aroB 1499560..1500612 (-) 1053 WP_114671919.1 3-dehydroquinate synthase -
  DVJ83_RS07435 (DVJ83_07430) - 1500599..1501315 (-) 717 WP_017870524.1 shikimate kinase -
  DVJ83_RS07440 (DVJ83_07435) aroC 1501323..1502471 (-) 1149 WP_114671920.1 chorismate synthase -
  DVJ83_RS07445 (DVJ83_07440) pilQ 1502614..1504626 (-) 2013 WP_114671921.1 type II secretion system protein GspD Machinery gene
  DVJ83_RS07450 (DVJ83_07445) - 1504630..1506618 (-) 1989 WP_114671922.1 hypothetical protein -
  DVJ83_RS07455 (DVJ83_07450) - 1506615..1507301 (-) 687 WP_114671923.1 type 4a pilus biogenesis protein PilO -
  DVJ83_RS07460 (DVJ83_07455) - 1507298..1507984 (-) 687 WP_114671924.1 hypothetical protein -
  DVJ83_RS07465 (DVJ83_07460) pilM 1507977..1509152 (-) 1176 WP_114671925.1 type IV pilus biogenesis protein PilM -

Sequence

Protein


Download         Length: 670 a.a.        Molecular weight: 70185.99 Da        Isoelectric Point: 6.1372

>NTDB_id=303810 DVJ83_RS07445 WP_114671921.1 1502614..1504626(-) (pilQ) [Deinococcus wulumuqiensis strain NEB 479]
MNKRHALFLTAVLGMATAQAQTAPIPVTSATTVVNTGGDPQLSKANVTFNISQTGNALTATLIALAKSAGYEIVIEPSAA
AALVGTATPTQAAGGQLATYNFVNRPFNEVWPLLLDLYGLSYENIQVGNTGILRVSVKPIQRIMALPESLDAVRVERQLK
LSFGTLKRVEATNTQGVNNDSSSTSNTVSSTKTIQEDIILDSSTLKIVAETVSNSIIVRGTNQEVAQVVSLLNGIISQAN
TGAYIRQVYSLKGNWSTIESVLSGQFPDIRVTPAGRQVILTGVASRIEAANALLNQIDQAPTITGPQTVQRVFQLTNASA
EEVKATLEGTLARDLTTDSSGDALPNVPVTATDANGNTTVVSVPNALGRTANQGTAQTQATQTQATQTQAAPAGTQQATL
IADKRTNSLIVRGTPEQVAQVAELIPQLDQVVPQINVQVRIQEVNERALQSLGLNWRATFGGFNVAVTGGTGLAATFNPT
QSFLGFNIFPTLTALETQGLTRRVYDGNVTMQSGQRSLSATGGAQNASSSAAASVKSGGRLEINIPSAAGNIVRQIDYGL
NLDFFSPQVAPDGTITLRVRGQVNQPATPITADSLPNLIDFTNSEAQSTITFRNGQTVLMSGLLGSTETNSSSGVPFLSS
LPGIGAAFGEKRSEKTQSQLLVIITGTVVK

Nucleotide


Download         Length: 2013 bp        

>NTDB_id=303810 DVJ83_RS07445 WP_114671921.1 1502614..1504626(-) (pilQ) [Deinococcus wulumuqiensis strain NEB 479]
ATGAATAAACGACACGCCCTTTTCCTGACCGCCGTGCTGGGCATGGCCACCGCTCAAGCCCAGACTGCACCGATTCCTGT
GACCTCAGCTACGACTGTAGTCAACACTGGAGGCGACCCGCAGCTTTCCAAAGCCAATGTCACATTCAACATTTCCCAGA
CGGGCAACGCTCTGACGGCGACCCTCATTGCTCTTGCTAAGAGTGCTGGTTACGAAATCGTCATCGAACCGAGTGCTGCT
GCTGCGCTGGTGGGTACGGCTACACCAACGCAGGCAGCAGGTGGACAACTGGCGACCTATAACTTCGTCAATCGTCCATT
CAATGAAGTTTGGCCCTTGCTGCTTGACCTTTATGGCCTAAGCTATGAAAATATTCAGGTTGGAAACACTGGCATTCTAC
GGGTCAGCGTTAAGCCAATTCAACGCATTATGGCACTTCCTGAATCGTTAGATGCCGTAAGGGTAGAAAGACAACTTAAA
TTATCCTTTGGTACTTTAAAAAGGGTCGAGGCTACTAATACTCAGGGCGTAAATAATGATTCCAGTTCTACTAGTAATAC
TGTAAGTTCAACTAAGACGATACAGGAAGATATTATACTCGATTCATCTACTCTAAAAATAGTAGCCGAAACTGTTTCCA
ATAGTATAATCGTGCGTGGAACGAACCAGGAAGTTGCCCAAGTTGTAAGTTTATTGAATGGAATTATATCTCAGGCAAAT
ACTGGCGCTTATATACGTCAAGTTTATAGTCTGAAGGGTAACTGGTCGACTATAGAATCGGTTCTTTCTGGGCAATTCCC
AGACATCCGAGTCACCCCTGCTGGTCGGCAAGTAATTCTCACTGGTGTTGCTAGTCGAATTGAAGCTGCCAATGCTCTAC
TGAACCAGATTGACCAAGCCCCAACAATTACTGGACCCCAGACCGTCCAGCGCGTTTTCCAGCTCACCAACGCCAGCGCC
GAGGAAGTCAAGGCGACCCTGGAAGGCACGCTGGCGCGTGACCTGACCACTGACAGCAGCGGCGACGCCCTGCCCAATGT
GCCCGTGACCGCCACCGACGCCAACGGCAATACGACAGTGGTCAGTGTGCCCAATGCACTCGGCAGGACGGCCAACCAGG
GAACGGCCCAGACCCAGGCGACGCAGACCCAGGCGACGCAGACCCAGGCGGCTCCGGCGGGAACCCAGCAGGCGACCCTG
ATCGCCGACAAGCGCACCAACAGCCTGATCGTGCGCGGAACGCCCGAGCAGGTGGCGCAGGTGGCGGAACTGATTCCGCA
ACTCGACCAGGTGGTGCCGCAGATCAACGTGCAGGTGCGCATTCAGGAGGTCAACGAGCGGGCGCTGCAATCCCTGGGCC
TGAACTGGCGGGCGACCTTCGGCGGCTTCAACGTGGCCGTGACCGGCGGCACCGGACTGGCCGCCACCTTCAACCCCACC
CAGAGTTTCCTGGGCTTCAACATCTTCCCGACGCTCACCGCGCTCGAAACCCAGGGCCTGACCCGGCGCGTGTACGACGG
CAACGTGACCATGCAGAGCGGCCAGCGGTCGCTGAGTGCCACGGGCGGCGCCCAGAACGCGTCGAGCAGCGCGGCGGCGA
GCGTCAAGAGCGGTGGGCGACTGGAAATCAACATTCCTTCGGCGGCGGGCAACATCGTCCGGCAGATCGACTACGGCCTC
AACCTCGACTTTTTCAGCCCGCAGGTGGCGCCCGACGGCACCATCACCCTGCGCGTTCGCGGTCAGGTCAACCAGCCCGC
CACGCCTATCACCGCTGACAGCCTGCCCAACCTGATCGACTTCACCAACAGTGAAGCGCAGAGCACCATCACCTTCAGAA
ACGGTCAGACGGTCCTGATGAGCGGCCTGCTCGGCAGCACCGAGACGAACAGCAGCAGCGGCGTGCCTTTCCTGAGCAGC
CTGCCTGGAATCGGCGCGGCCTTCGGCGAAAAACGCAGCGAGAAGACGCAGTCTCAACTGCTCGTCATCATCACCGGCAC
GGTCGTCAAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(311-433)

Bacterial type II and III secretion system protein (Secretin)

(528-670)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345IH51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

82.477

63.881

0.527

Multiple sequence alignment