Detailed information NTG0303806

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: DVJ83_RS04270
• Genome accession: NZ_CP031158
• Coordinates: 856692..857312 (+)
• Length: 206 a.a.
• NCBI ID: WP_114671513.1
• Uniprot ID: A0A345IFP0
• Organism: Deinococcus wulumuqiensis strain NEB 479
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	842773..856573	856692..857312	flank	119

Gene organization within MGE regions

Location: 842773..857312

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DVJ83_RS04215 (DVJ83_04215)	-	842773..843609 (+)	837	WP_114671007.1	transposase	-
DVJ83_RS04220 (DVJ83_04220)	-	843811..845034 (+)	1224	WP_162865378.1	transposase	-
DVJ83_RS04225 (DVJ83_04225)	-	845126..846313 (+)	1188	WP_162865379.1	amidase	-
DVJ83_RS04230 (DVJ83_04230)	msrB	846378..846851 (+)	474	WP_017869144.1	peptide-methionine (R)-S-oxide reductase MsrB	-
DVJ83_RS04235 (DVJ83_04235)	-	847041..850769 (-)	3729	WP_162865380.1	DUF11 domain-containing protein	-
DVJ83_RS20415	-	850796..851272 (-)	477	WP_205413551.1	IS1595 family transposase	-
DVJ83_RS19875	-	851269..851487 (-)	219	WP_240319366.1	hypothetical protein	-
DVJ83_RS20420	-	851614..851745 (-)	132	Protein_809	transposase	-
DVJ83_RS04245 (DVJ83_04245)	ychF	852041..853138 (+)	1098	WP_114671511.1	redox-regulated ATPase YchF	-
DVJ83_RS04250 (DVJ83_04250)	-	853216..853887 (-)	672	WP_240319368.1	N-acetylmuramoyl-L-alanine amidase family protein	-
DVJ83_RS19880	-	853881..854312 (-)	432	WP_240319370.1	hypothetical protein	-
DVJ83_RS04260 (DVJ83_04260)	-	854645..855298 (+)	654	WP_114671512.1	hypothetical protein	-
DVJ83_RS04265 (DVJ83_04265)	-	855842..856573 (+)	732	WP_205413524.1	IS1 family transposase	-
DVJ83_RS04270 (DVJ83_04270)	comF	856692..857312 (+)	621	WP_114671513.1	ComF family protein	Machinery gene

Sequence

Protein

• Length: 206 a.a.
• Molecular weight: 21633.15 Da
• Isoelectric Point: 11.2140

>NTDB_id=303806 DVJ83_RS04270 WP_114671513.1 856692..857312(+) (comF) [Deinococcus wulumuqiensis strain NEB 479]
MLDLLRRLLPRPCPGCGEQLGRAAGLCTRCRAGLRPRTEQHSPLSPTPVPHLVTLGRYQGVLRRAVRALKYGGARDVAGA
LGSALAAGVPADWQVAAVVPVPLHSSRQRQRGYNQAELLAQAVAAELGVPCLPVLLRTRATAQQAKLHASERGANLAGAF
RVRGPLPTGTLLLVDDVLTTGHTLQACRDALSAAGAGDLKYAVVAR

Nucleotide

• Length: 621 bp

>NTDB_id=303806 DVJ83_RS04270 WP_114671513.1 856692..857312(+) (comF) [Deinococcus wulumuqiensis strain NEB 479]
ATGCTCGACCTGTTGCGGCGCCTGCTCCCGCGCCCTTGTCCCGGTTGCGGCGAACAGCTGGGCCGCGCCGCTGGGCTGTG
CACCCGCTGCCGCGCCGGGCTGCGGCCCCGGACCGAGCAGCACTCGCCGCTGTCACCCACCCCTGTCCCGCATCTGGTCA
CGCTGGGACGCTATCAGGGCGTGCTCCGCCGGGCGGTCCGGGCGCTGAAATACGGCGGGGCGCGGGACGTGGCCGGGGCG
CTGGGCAGCGCTCTGGCAGCAGGTGTTCCGGCAGACTGGCAGGTGGCGGCGGTCGTGCCGGTGCCGCTGCATTCCTCGCG
TCAGCGGCAGCGCGGCTACAACCAGGCCGAACTGCTCGCGCAGGCCGTCGCCGCCGAGCTGGGGGTGCCCTGCCTGCCCG
TGCTGCTGCGTACCCGCGCCACTGCCCAGCAGGCCAAGTTGCACGCCAGCGAACGCGGCGCGAACCTGGCCGGGGCTTTC
AGGGTGCGCGGCCCGCTGCCGACGGGGACGCTTTTGCTGGTCGACGACGTGCTGACCACCGGACACACATTGCAGGCCTG
CCGCGACGCCCTCAGCGCCGCCGGAGCGGGCGACCTGAAATACGCCGTGGTCGCACGCTAG

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (116-205)

• Double zinc ribbon domain (DZR_2) (4-40)

3D structure

• AlphaFold DB: A0A345IFP0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	82.524	100	0.825
comF	Porphyromonas gingivalis W83	33.784	100	0.364