Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ETT47_RS07580 Genome accession   NZ_CP035452
Coordinates   1522059..1522592 (-) Length   177 a.a.
NCBI ID   WP_136099290.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm123     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1517059..1527592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT47_RS07560 (ETT47_07550) - 1517228..1517833 (-) 606 WP_002982799.1 response regulator transcription factor -
  ETT47_RS07565 (ETT47_07555) - 1517814..1519376 (-) 1563 WP_136099287.1 hypothetical protein -
  ETT47_RS07570 (ETT47_07560) - 1519416..1521323 (-) 1908 WP_136099288.1 FtsX-like permease family protein -
  ETT47_RS07575 (ETT47_07565) - 1521325..1522062 (-) 738 WP_136099289.1 ABC transporter ATP-binding protein -
  ETT47_RS07580 (ETT47_07570) rcrQ 1522059..1522592 (-) 534 WP_136099290.1 ABC transporter ATP-binding protein Regulator
  ETT47_RS07585 (ETT47_07575) - 1522594..1524218 (-) 1625 Protein_1400 DUF4135 domain-containing protein -
  ETT47_RS07590 (ETT47_07580) - 1524302..1524457 (-) 156 WP_002982773.1 type A2 lanthipeptide -
  ETT47_RS07595 (ETT47_07585) lacG 1524960..1526366 (-) 1407 WP_136099291.1 6-phospho-beta-galactosidase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 20586.52 Da        Isoelectric Point: 6.3377

>NTDB_id=303301 ETT47_RS07580 WP_136099290.1 1522059..1522592(-) (rcrQ) [Streptococcus pyogenes strain emm123]
MDKTDFRNISAFVSQDSPIFDGDVMYNISLGRESVTEKQVIETCKRVSLYEDIMSMPMKFHTPLFRDNPSLSGGQKQRIS
LARELVTTPRILVLDEPTSALDVKTERIIQKNVEALHCTRILVTHRLNTVEKADKILIMDNGKIIDYGNHHYLYKNNKDY
CDLYDSYMNKYQEEEVK

Nucleotide


Download         Length: 534 bp        

>NTDB_id=303301 ETT47_RS07580 WP_136099290.1 1522059..1522592(-) (rcrQ) [Streptococcus pyogenes strain emm123]
ATTGATAAAACTGATTTTAGGAATATATCGGCTTTTGTATCTCAAGATTCTCCAATATTTGATGGGGATGTGATGTATAA
CATTTCGCTAGGAAGAGAATCTGTTACAGAAAAACAAGTTATTGAAACTTGTAAAAGGGTATCACTATATGAGGATATCA
TGAGTATGCCAATGAAGTTTCATACCCCACTTTTTCGAGACAATCCATCACTATCTGGGGGGCAAAAACAACGAATTTCT
TTAGCAAGAGAGTTAGTAACCACCCCTAGAATCTTAGTTCTTGACGAACCTACATCAGCTTTAGATGTAAAAACTGAAAG
AATAATCCAAAAAAATGTTGAGGCTTTACATTGTACGAGGATTTTGGTTACCCACAGACTTAATACAGTTGAAAAAGCTG
ATAAGATTTTAATAATGGATAATGGCAAAATTATTGACTATGGAAACCATCATTATTTGTACAAAAATAATAAGGATTAT
TGTGACTTATATGACTCGTATATGAATAAATATCAGGAGGAAGAGGTAAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(5-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

36.932

99.435

0.367