Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   DN409_RS06580 Genome accession   NZ_CP031071
Coordinates   1266205..1266528 (-) Length   107 a.a.
NCBI ID   WP_002064339.1    Uniprot ID   J8AHG1
Organism   Bacillus mycoides strain BPN401     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1261205..1271528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN409_RS06555 (DN409_06555) sipW 1261557..1262126 (+) 570 WP_002064334.1 signal peptidase I SipW -
  DN409_RS06560 (DN409_06560) - 1262193..1262780 (+) 588 WP_002030432.1 CalY family protein -
  DN409_RS06565 (DN409_06565) - 1262845..1263696 (-) 852 WP_407707956.1 IS3 family transposase -
  DN409_RS31890 - 1263720..1264040 (-) 321 WP_016103355.1 transposase -
  DN409_RS06570 (DN409_06570) - 1264262..1265095 (+) 834 WP_061688799.1 DUF4047 domain-containing protein -
  DN409_RS06575 (DN409_06575) calY 1265528..1266121 (+) 594 WP_061675896.1 biofilm matrix protein CalY -
  DN409_RS06580 (DN409_06580) sinR 1266205..1266528 (-) 324 WP_002064339.1 helix-turn-helix domain-containing protein Regulator
  DN409_RS06585 (DN409_06585) - 1266608..1266742 (-) 135 WP_000276220.1 anti-repressor SinI family protein -
  DN409_RS06590 (DN409_06590) inhA1 1267084..1269471 (+) 2388 WP_061688800.1 M6 family metalloprotease immune inhibitor InhA1 -
  DN409_RS06595 (DN409_06595) - 1269643..1271010 (+) 1368 WP_149190277.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12320.06 Da        Isoelectric Point: 7.2050

>NTDB_id=303207 DN409_RS06580 WP_002064339.1 1266205..1266528(-) (sinR) [Bacillus mycoides strain BPN401]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKISAVLQIPVDTLLHDETTTESHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKKNQQ

Nucleotide


Download         Length: 324 bp        

>NTDB_id=303207 DN409_RS06580 WP_002064339.1 1266205..1266528(-) (sinR) [Bacillus mycoides strain BPN401]
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAGGGCATTTCACTAACAGAACTCGCCGAAAAAGCTGGTGTAGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTCGAAAAAATTTCAGCTGTTC
TACAAATTCCAGTTGATACGTTACTTCACGATGAAACAACAACAGAAAGTCATCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCGATGAGCTCCGGTGTCTCAAAAGAACAGTTTCGTGAATTTCTTGAATTTACACAATGGAAGAAAAATCAACA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8AHG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment