Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DN407_RS18880 Genome accession   NZ_CP031068
Coordinates   3667915..3668694 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus sp. JAS24-2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3662915..3673694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN407_RS18855 (DN407_18890) uppS 3663663..3664439 (-) 777 WP_149216591.1 isoprenyl transferase -
  DN407_RS18860 (DN407_18895) frr 3664525..3665082 (-) 558 WP_000531501.1 ribosome recycling factor -
  DN407_RS18865 (DN407_18900) pyrH 3665085..3665807 (-) 723 WP_000042668.1 UMP kinase -
  DN407_RS18870 (DN407_18905) tsf 3665874..3666761 (-) 888 WP_149216592.1 translation elongation factor Ts -
  DN407_RS18875 (DN407_18910) rpsB 3666865..3667566 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  DN407_RS18880 (DN407_18915) codY 3667915..3668694 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DN407_RS18885 (DN407_18920) hslU 3668772..3670163 (-) 1392 WP_000550087.1 ATP-dependent protease ATPase subunit HslU -
  DN407_RS18890 (DN407_18925) hslV 3670186..3670728 (-) 543 WP_048567505.1 ATP-dependent protease proteolytic subunit HslV -
  DN407_RS18895 (DN407_18930) xerC 3670771..3671670 (-) 900 WP_001101241.1 tyrosine recombinase XerC -
  DN407_RS18900 (DN407_18935) trmFO 3671736..3673040 (-) 1305 WP_000213002.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=303167 DN407_RS18880 WP_000421290.1 3667915..3668694(-) (codY) [Bacillus sp. JAS24-2]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=303167 DN407_RS18880 WP_000421290.1 3667915..3668694(-) (codY) [Bacillus sp. JAS24-2]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCGAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment