Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   DUN60_RS24980 Genome accession   NZ_CP031055
Coordinates   3332110..3332823 (-) Length   237 a.a.
NCBI ID   WP_167409365.1    Uniprot ID   -
Organism   Vibrio splendidus strain Vibrio sp     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3327110..3337823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DUN60_RS14975 - 3328252..3328740 (+) 489 WP_017086954.1 type II secretion system protein M -
  DUN60_RS14980 - 3328742..3329521 (+) 780 WP_114634183.1 type II secretion system protein N -
  DUN60_RS14985 cysQ 3329671..3330498 (-) 828 WP_114634184.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  DUN60_RS14990 nudE 3330535..3331086 (-) 552 WP_017094150.1 ADP compounds hydrolase NudE -
  DUN60_RS14995 nfuA 3331416..3332000 (-) 585 WP_004735612.1 Fe-S biogenesis protein NfuA -
  DUN60_RS24980 comF 3332110..3332823 (-) 714 WP_167409365.1 ComF family protein Machinery gene
  DUN60_RS15005 bioH 3332917..3333693 (+) 777 WP_114634185.1 pimeloyl-ACP methyl ester esterase BioH -
  DUN60_RS15010 - 3333868..3334341 (+) 474 WP_004735616.1 hypothetical protein -
  DUN60_RS15015 - 3334480..3336810 (-) 2331 WP_114634186.1 Tex family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27257.35 Da        Isoelectric Point: 8.7441

>NTDB_id=302985 DUN60_RS24980 WP_167409365.1 3332110..3332823(-) (comF) [Vibrio splendidus strain Vibrio sp]
MLSDWLQKHTPRLVTPQCHLCKLDKSHSDAHPRWCDSCLNLFESVPRCQRCGLKTLTIVEQCGQCLSQPPPWHRLYCVGD
YTFPTARYIQQMKYADKFWFARDLSKLLASRIQHPATLITSVPLHWTRYIHRGFNQSQLLAHYTAQELNVKNTVLFRRSH
STPSQQGLTKSARQSNLKDAFTLHNTNFSAIDYPHIAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=302985 DUN60_RS24980 WP_167409365.1 3332110..3332823(-) (comF) [Vibrio splendidus strain Vibrio sp]
ATGTTATCCGATTGGCTACAAAAACACACACCACGTCTGGTCACACCTCAATGCCACTTATGCAAGCTAGATAAGTCGCA
CAGCGATGCTCACCCTCGATGGTGTGATTCTTGTCTTAATCTCTTTGAGTCAGTTCCTCGTTGCCAACGATGTGGCTTGA
AAACACTGACGATCGTCGAACAGTGTGGTCAATGCTTATCTCAACCTCCACCTTGGCATCGTCTCTATTGCGTTGGGGAC
TACACCTTCCCAACGGCACGTTATATCCAACAGATGAAGTACGCCGATAAGTTTTGGTTTGCTCGTGATCTGTCGAAACT
GCTAGCGTCACGAATTCAACACCCAGCAACGTTGATTACCAGTGTTCCTTTACATTGGACTCGATACATTCATCGAGGCT
TTAATCAGAGCCAGTTATTGGCACATTACACAGCTCAGGAACTGAACGTTAAAAATACGGTTTTATTTCGACGTTCTCAC
TCAACACCTTCACAACAAGGATTAACCAAATCAGCAAGACAGAGCAATCTCAAAGATGCTTTCACGCTGCATAATACGAA
TTTCTCAGCGATTGATTACCCTCACATCGCGATAATTGATGATGTTGTAACCACAGGCAGTACAGTGTATCAATTATGCC
AATTACTACTTGAAGTGGGCGTTAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.508

99.578

0.553
  comF Vibrio campbellii strain DS40M4

47.737

100

0.489

Multiple sequence alignment