Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   DT351_RS09115 Genome accession   NZ_CP031003
Coordinates   1731522..1732079 (-) Length   185 a.a.
NCBI ID   WP_035185909.1    Uniprot ID   A0AAJ0LDD0
Organism   Latilactobacillus curvatus strain TMW 1.1928     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1726522..1737079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DT351_RS09090 (DT351_09090) - 1726838..1727470 (+) 633 WP_076786783.1 type II CAAX endopeptidase family protein -
  DT351_RS09095 (DT351_09095) - 1727523..1728170 (-) 648 WP_076786782.1 redox-sensing transcriptional repressor Rex -
  DT351_RS09100 (DT351_09100) - 1728366..1730309 (+) 1944 WP_076789313.1 ABC-F family ATP-binding cassette domain-containing protein -
  DT351_RS09105 (DT351_09105) - 1730460..1730819 (-) 360 WP_004265057.1 YccF domain-containing protein -
  DT351_RS09110 (DT351_09110) - 1730926..1731243 (-) 318 WP_004265021.1 PTS sugar transporter subunit IIB -
  DT351_RS09115 (DT351_09115) sigH 1731522..1732079 (-) 558 WP_035185909.1 sigma-70 family RNA polymerase sigma factor Regulator
  DT351_RS09120 (DT351_09120) - 1732155..1732688 (-) 534 WP_004265051.1 NYN domain-containing protein -
  DT351_RS09125 (DT351_09125) rlmB 1732692..1733579 (-) 888 WP_081395372.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DT351_RS09130 (DT351_09130) - 1733566..1733973 (-) 408 WP_004265086.1 Mini-ribonuclease 3 -
  DT351_RS09135 (DT351_09135) cysS 1733970..1735376 (-) 1407 WP_076786780.1 cysteine--tRNA ligase -
  DT351_RS09140 (DT351_09140) - 1735922..1737034 (-) 1113 WP_004265009.1 PIN/TRAM domain-containing protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 21709.91 Da        Isoelectric Point: 6.2310

>NTDB_id=302789 DT351_RS09115 WP_035185909.1 1731522..1732079(-) (sigH) [Latilactobacillus curvatus strain TMW 1.1928]
MELAKRDANLIQAVVENDSEALDVLFKAYLPMVYRTFTPYYIRLFDEDDWLQEARIVCYETCQCYDQNCGKSFGGFYKLR
FHHHVLNLIRKELAQKRRVDQQALLFDCCPECNALAEDTVAYYQSTVEMRAYLETLSALELVAFRVLTGQLAVEQACSQL
DCTFEQMKRAQSRCQTKLKRFYTKQ

Nucleotide


Download         Length: 558 bp        

>NTDB_id=302789 DT351_RS09115 WP_035185909.1 1731522..1732079(-) (sigH) [Latilactobacillus curvatus strain TMW 1.1928]
ATGGAATTAGCAAAACGTGATGCAAACTTAATTCAAGCGGTGGTTGAAAACGATTCTGAGGCGTTGGATGTTTTATTTAA
AGCCTACCTACCAATGGTTTATCGCACCTTTACTCCATATTATATTCGCTTATTTGATGAGGACGATTGGTTACAAGAAG
CGCGAATCGTCTGTTATGAGACTTGCCAGTGTTATGATCAAAATTGCGGCAAAAGTTTTGGTGGTTTTTATAAATTACGC
TTTCACCACCACGTATTAAACTTGATTCGCAAAGAACTTGCTCAGAAACGACGGGTCGATCAGCAAGCCCTGTTATTTGA
TTGTTGTCCGGAATGCAATGCGCTCGCTGAAGATACCGTGGCATACTATCAGTCAACGGTTGAAATGCGGGCGTACTTAG
AGACACTATCTGCTTTAGAGTTAGTGGCCTTTCGGGTTTTGACGGGGCAACTAGCAGTTGAGCAAGCGTGTAGCCAGCTA
GATTGCACGTTTGAACAGATGAAACGGGCACAATCGCGTTGCCAGACAAAATTAAAACGATTCTATACTAAACAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

73.077

98.378

0.719

Multiple sequence alignment