Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   DR994_RS06550 Genome accession   NZ_CP030927
Coordinates   1270404..1271342 (-) Length   312 a.a.
NCBI ID   WP_173940584.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CS9     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1265404..1276342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DR994_RS06530 (DR994_06715) - 1266945..1267808 (-) 864 WP_011226821.1 Rgg/GadR/MutR family transcriptional regulator -
  DR994_RS06535 (DR994_06720) dusB 1268011..1268988 (-) 978 WP_011680674.1 tRNA dihydrouridine synthase DusB -
  DR994_RS06540 (DR994_06725) hslO 1268981..1269847 (-) 867 WP_002949275.1 Hsp33 family molecular chaperone HslO -
  DR994_RS06545 (DR994_06730) - 1269928..1270182 (-) 255 WP_224103662.1 hypothetical protein -
  DR994_RS06550 (DR994_06735) amiF 1270404..1271342 (-) 939 WP_173940584.1 ATP-binding cassette domain-containing protein Regulator
  DR994_RS06555 (DR994_06740) - 1271344..1272389 (-) 1046 Protein_1260 ABC transporter ATP-binding protein -
  DR994_RS06560 (DR994_06745) - 1272403..1273437 (-) 1035 Protein_1261 ABC transporter permease -
  DR994_RS06565 (DR994_06750) - 1273448..1273667 (-) 220 Protein_1262 ABC transporter permease subunit -
  DR994_RS06570 (DR994_06755) - 1273669..1274682 (-) 1014 Protein_1263 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35270.81 Da        Isoelectric Point: 5.9047

>NTDB_id=302368 DR994_RS06550 WP_173940584.1 1270404..1271342(-) (amiF) [Streptococcus thermophilus strain CS9]
MTQERKKLVELKNVSLTFNKGKSNEVEAIDDVSFDIYEGEIFGLVGESGSGKTTIGRSVLKLSDIDSGTVTFSGNEISSL
KGKDLHDFRKTDQMIFQDPQSSLNGRMKIRDIIAEGIDIHKLAKSKEEREAKVKELIDLVGLNEDHLSRYPHEFSGGQRQ
RIGIARALAVNHHFIVADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGPADE
IYHNPIHPYTKSLLSAIPEPDPERERKRQHLIYDSSIENDGENRQMYEIQPGHFVYATEAEAKNYKEEAKSN

Nucleotide


Download         Length: 939 bp        

>NTDB_id=302368 DR994_RS06550 WP_173940584.1 1270404..1271342(-) (amiF) [Streptococcus thermophilus strain CS9]
ATGACACAAGAACGTAAAAAGTTAGTAGAACTAAAAAATGTGTCTCTAACTTTTAATAAAGGAAAATCAAACGAGGTTGA
GGCTATTGATGACGTTAGCTTTGATATCTATGAGGGCGAAATTTTTGGACTAGTTGGAGAATCTGGATCAGGTAAAACAA
CCATTGGGCGATCTGTTTTAAAACTTTCTGATATTGATTCGGGTACTGTTACCTTTTCAGGTAATGAGATATCAAGTTTA
AAAGGGAAAGATCTTCATGATTTCCGTAAGACAGATCAGATGATCTTTCAAGATCCTCAATCTAGTCTTAATGGACGCAT
GAAAATCCGTGATATTATTGCTGAAGGCATTGATATTCATAAATTGGCTAAATCTAAGGAAGAGCGTGAAGCTAAGGTTA
AAGAACTCATTGATTTGGTAGGGTTAAATGAAGATCACCTATCAAGATATCCTCATGAGTTTTCTGGTGGTCAACGTCAA
AGAATTGGTATTGCGCGTGCTTTAGCGGTTAATCATCATTTTATTGTAGCAGACGAACCGATTTCTGCTTTGGATGTTTC
TATTCAAGCACAAGTGGTTAATTTGATGCAGAAGTTGCAACATGAACAGGGGTTAACTTATTTGTTTATTGCCCATGACC
TATCGATGGTTAAATATATATCCGATCGTATTGGTGTAATGCATTGGGGTAAACTTCTTGAAGTGGGACCAGCAGATGAG
ATCTATCATAACCCGATTCATCCTTATACAAAGAGTCTATTATCTGCAATTCCAGAACCAGATCCAGAAAGAGAGCGTAA
GCGTCAGCATTTGATTTACGATTCCTCTATTGAAAATGATGGGGAAAATAGACAAATGTATGAAATCCAACCAGGGCATT
TTGTTTATGCTACAGAAGCAGAGGCTAAAAATTATAAAGAAGAAGCCAAGTCTAATTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(30-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

53.115

97.756

0.519
  amiF Streptococcus thermophilus LMG 18311

52.787

97.756

0.516
  amiF Streptococcus salivarius strain HSISS4

52.459

97.756

0.513

Multiple sequence alignment