Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   DS746_RS07205 Genome accession   NZ_CP030888
Coordinates   1382453..1383421 (+) Length   322 a.a.
NCBI ID   WP_052775669.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CS19     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1377453..1388421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DS746_RS07180 (DS746_1412) cdsA 1378351..1379076 (-) 726 WP_002921103.1 phosphatidate cytidylyltransferase -
  DS746_RS07185 (DS746_1413) - 1379085..1379423 (-) 339 WP_002855905.1 hypothetical protein -
  DS746_RS07190 (DS746_1414) - 1379425..1380732 (-) 1308 WP_002921101.1 NFACT family protein -
  DS746_RS07195 (DS746_1415) mobA 1380794..1381369 (+) 576 WP_002921099.1 molybdenum cofactor guanylyltransferase -
  DS746_RS07200 (DS746_1416) pldA 1381366..1382367 (+) 1002 WP_070242255.1 phospholipase A -
  DS746_RS07205 (DS746_1417) ceuB 1382453..1383421 (+) 969 WP_052775669.1 ABC transporter permease Machinery gene
  DS746_RS07210 (DS746_1418) ceuC 1383414..1384352 (+) 939 WP_002921091.1 iron chelate uptake ABC transporter family permease subunit -
  DS746_RS07215 (DS746_1419) ceuD 1384349..1385104 (+) 756 WP_002921089.1 ABC transporter ATP-binding protein -
  DS746_RS07220 (DS746_1420) ceuB 1385117..1386109 (+) 993 WP_002921087.1 enterochelin ABC transporter substrate-binding protein CeuB -
  DS746_RS07225 (DS746_1421) - 1386264..1386485 (+) 222 WP_002853781.1 hypothetical protein -
  DS746_RS07230 (DS746_1422) - 1386486..1386767 (+) 282 WP_002866775.1 type II toxin-antitoxin system RelE/ParE family toxin -
  DS746_RS07240 (DS746_1423) - 1387127..1387681 (-) 555 WP_002921085.1 membrane protein -

Sequence


Protein


Download         Length: 322 a.a.        Molecular weight: 35461.34 Da        Isoelectric Point: 9.6678

>NTDB_id=302091 DS746_RS07205 WP_052775669.1 1382453..1383421(+) (ceuB) [Campylobacter jejuni strain CS19]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNFNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILVSLIFFSGASFFTQATIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITIFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=302091 DS746_RS07205 WP_052775669.1 1382453..1383421(+) (ceuB) [Campylobacter jejuni strain CS19]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATTTTAACTCCACTCAATTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCGATTTTACTTACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACAGCAGGGACTATGGATTGTGCTAAATTTGGCATACTTGTTTCTTTAATATTTTTTTCTGGAGCATC
TTTTTTCACTCAAGCTACCATTGCTTCTGTATTTGCGCTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACCATTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTGCCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATTACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGCATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGAATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGTGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains


Predicted by InterproScan.

(15-317)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

98.137

100

0.981


Multiple sequence alignment