Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LCK_RS01840 Genome accession   NC_010471
Coordinates   358158..359945 (+) Length   595 a.a.
NCBI ID   WP_036060955.1    Uniprot ID   -
Organism   Leuconostoc citreum KM20     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 353158..364945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCK_RS01820 (LCK_00345) - 353253..354701 (+) 1449 WP_004907404.1 ABC transporter substrate-binding protein/permease -
  LCK_RS01825 (LCK_00346) - 354698..355450 (+) 753 WP_004900167.1 amino acid ABC transporter ATP-binding protein -
  LCK_RS01830 (LCK_00347) - 355545..356984 (+) 1440 WP_004907401.1 ABC transporter substrate-binding protein/permease -
  LCK_RS01835 (LCK_00348) - 357033..358070 (+) 1038 WP_004907400.1 competence protein CoiA family protein -
  LCK_RS01840 (LCK_00349) pepF 358158..359945 (+) 1788 WP_036060955.1 oligoendopeptidase F Regulator
  LCK_RS01845 (LCK_00350) - 359997..360398 (+) 402 WP_004907398.1 cytidine deaminase -
  LCK_RS01850 (LCK_00351) - 360418..361338 (+) 921 WP_004905936.1 NAD(P)-dependent oxidoreductase -
  LCK_RS01855 (LCK_00352) - 361371..362339 (-) 969 WP_004900152.1 LacI family DNA-binding transcriptional regulator -
  LCK_RS01860 (LCK_00353) - 362529..363545 (+) 1017 WP_004900149.1 zinc-dependent alcohol dehydrogenase family protein -
  LCK_RS01865 (LCK_00354) - 363550..364281 (+) 732 WP_004900146.1 hypothetical protein -
  LCK_RS01870 (LCK_00355) - 364347..364732 (+) 386 Protein_357 VOC family protein -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 67704.35 Da        Isoelectric Point: 4.7054

>NTDB_id=30205 LCK_RS01840 WP_036060955.1 358158..359945(+) (pepF) [Leuconostoc citreum KM20]
MPQIKRHEVPTALTWDLTTIFSSDEAWEKTFQKVHESAQNMTRFVGHVGDSADMLQAALVADLSLERLLEKVYVYAHQIY
DQDTTNQQYAAFNARVQALWAEVSEATAYFQPEVLRIPDTVLAEYLATPGLEPFSHLFDTIRLQKPHTLPVEQEALLAGA
SDIFNASENTFGVLDNSDLSFGDVHTETGELVPLTNGLYSLLLESQSRDLRQEAFDTLYDSYISFQNTFASTLSSHVKGH
NFLAKARHYDSAREAAILPHGLPTTVFETLRKSVNDHLPLLHRFVSLRRQVLGVEDVHSYDLYVPLVDDVTFDVSYDKAQ
DIVIKALAPLGEDYVRIVQRAFDERWIDVVENKGKRTGAYSSGAYDTNPFILLNWQDNLNNVYTLAHELGHSVHSYLTRH
TQPYHYGDYPIFLAEIASTTNESLLTDYLLKTNHDPKVQAYVLNQYLDGFKGTVFRQTQFAEFEDWIHQQAAEGEALTAD
KMSSYYGELNQKYYGPDLFPDEAIAYEWARIPHFYYNYYVYQYATGEAAATTLADRIINHDGANDYKNYLRAGASDYPLN
VIGKAGVDMSQSDYLNQAFHVFETRLNQLEKLLAN

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=30205 LCK_RS01840 WP_036060955.1 358158..359945(+) (pepF) [Leuconostoc citreum KM20]
ATGCCACAGATAAAGCGTCATGAAGTGCCAACAGCGTTAACATGGGATTTAACAACTATTTTTTCATCAGATGAGGCCTG
GGAAAAGACTTTTCAAAAAGTTCATGAATCAGCTCAAAATATGACGCGTTTCGTTGGGCACGTCGGTGATTCGGCTGACA
TGTTACAAGCGGCATTAGTGGCAGATTTATCGTTGGAACGTTTATTAGAGAAAGTTTACGTCTACGCCCACCAAATATAT
GATCAAGACACAACTAATCAGCAGTATGCAGCATTTAACGCTCGAGTACAGGCGCTTTGGGCTGAAGTTAGTGAAGCGAC
GGCCTATTTTCAGCCTGAAGTATTGCGCATTCCTGATACGGTATTAGCTGAGTATCTAGCAACACCTGGGTTAGAACCAT
TTAGTCATTTATTTGATACGATTCGTTTACAAAAGCCACACACACTACCTGTTGAACAAGAAGCGCTACTAGCTGGTGCT
AGTGATATTTTTAATGCGTCTGAAAATACATTTGGTGTGCTTGATAATTCAGATCTGTCTTTCGGAGATGTGCATACTGA
AACAGGTGAACTGGTGCCTTTGACTAATGGTTTGTACAGTCTATTATTAGAATCGCAATCACGCGACCTACGTCAGGAAG
CATTTGATACACTCTATGACAGCTATATTAGTTTTCAAAATACTTTTGCTTCAACACTGTCATCGCATGTGAAAGGCCAT
AATTTCTTGGCGAAAGCACGACATTATGATTCAGCGCGCGAGGCCGCTATTTTACCACATGGCTTACCTACAACGGTTTT
TGAGACCCTAAGAAAATCAGTTAATGATCATTTGCCATTACTACATCGATTTGTCTCGTTACGTCGTCAAGTGTTGGGTG
TTGAAGACGTCCATAGCTATGACTTATACGTGCCCTTAGTTGATGATGTTACATTTGATGTTTCCTATGATAAGGCGCAA
GACATTGTGATTAAAGCATTAGCGCCATTGGGCGAGGATTATGTGCGTATTGTCCAGCGTGCCTTTGATGAACGTTGGAT
AGATGTTGTTGAAAACAAGGGTAAACGGACAGGAGCATACTCTAGCGGCGCGTACGATACCAATCCTTTTATTCTATTGA
ATTGGCAAGATAATTTAAATAATGTTTATACTTTAGCTCATGAGTTGGGACATTCTGTTCATTCTTATTTAACAAGACAT
ACACAACCCTATCATTACGGTGACTACCCCATTTTTTTGGCAGAAATTGCTTCTACAACGAATGAAAGTCTATTAACAGA
TTATTTACTGAAAACTAATCATGATCCTAAGGTGCAAGCTTATGTCTTGAACCAATATCTAGACGGTTTCAAAGGGACGG
TCTTTAGACAAACGCAATTTGCAGAATTTGAAGATTGGATTCATCAACAAGCTGCTGAGGGCGAGGCTCTAACGGCTGAT
AAAATGAGTAGTTATTATGGTGAATTAAATCAAAAGTATTATGGCCCAGATTTGTTTCCTGATGAGGCTATTGCGTATGA
GTGGGCACGAATTCCGCATTTTTATTACAATTACTATGTTTATCAATATGCAACAGGTGAAGCAGCTGCTACAACACTAG
CTGACCGTATTATCAATCACGATGGTGCTAATGACTACAAAAATTATTTACGTGCTGGCGCCTCTGATTATCCGCTAAAT
GTTATTGGAAAAGCTGGTGTTGATATGAGCCAGTCAGATTATCTGAACCAAGCTTTCCATGTCTTTGAAACGCGACTGAA
CCAGTTAGAAAAGTTACTTGCAAACTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(202-579)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.515

99.832

0.514

Multiple sequence alignment