Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   DS737_RS07655 Genome accession   NZ_CP030880
Coordinates   1672814..1673593 (+) Length   259 a.a.
NCBI ID   WP_113997232.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain HW-2A     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1667814..1678593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DS737_RS07620 - 1667987..1668970 (+) 984 WP_004639309.1 DNA polymerase III subunit delta' -
  DS737_RS07625 - 1669114..1669422 (+) 309 WP_004639308.1 hypothetical protein -
  DS737_RS07630 - 1669745..1670089 (+) 345 WP_004639306.1 PilZ domain-containing protein -
  DS737_RS07635 - 1670110..1670883 (+) 774 WP_113997230.1 TatD family hydrolase -
  DS737_RS07640 - 1670925..1671530 (+) 606 WP_017394545.1 TetR/AcrR family transcriptional regulator -
  DS737_RS07645 - 1671545..1672156 (+) 612 WP_005080458.1 type II secretion system protein -
  DS737_RS16265 xcpV 1672464..1672808 (+) 345 WP_042110486.1 type II secretion system protein Machinery gene
  DS737_RS07655 xcpW 1672814..1673593 (+) 780 WP_113997232.1 type II secretion system minor pseudopilin GspJ Machinery gene
  DS737_RS07660 gspK 1673595..1674572 (+) 978 WP_113997233.1 type II secretion system minor pseudopilin GspK -
  DS737_RS07665 - 1674658..1675254 (+) 597 WP_017394547.1 6-carboxytetrahydropterin synthase -
  DS737_RS07670 ung 1675301..1676014 (+) 714 WP_005080468.1 uracil-DNA glycosylase -
  DS737_RS07675 - 1676011..1677135 (+) 1125 WP_171055793.1 enoyl-CoA hydratase/isomerase family protein -
  DS737_RS07680 tadA 1677140..1677652 (+) 513 WP_005080470.1 tRNA adenosine(34) deaminase TadA -
  DS737_RS07685 - 1677720..1678160 (+) 441 WP_004639295.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29983.17 Da        Isoelectric Point: 9.4688

>NTDB_id=302023 DS737_RS07655 WP_113997232.1 1672814..1673593(+) (xcpW) [Acinetobacter haemolyticus strain HW-2A]
MNNKNNNMQISKFHFVNPRTQSLAFRLAERSSSARLNRDHSEHSSSSCARTKFHFVNPRSGFTLVELLVAIAIFAVLSML
GWKVFDYLLKVKDRNAEHEVNLFALQDAYQQILRDSLQIIPLTANDGRQLQAALVLNDQVFMFSKAGVSDPLKQGLSPYE
RIEYRFDESQKRLYRLKYTNLNIPNRVQPMSSALLDNVERFKVSVFNPQELMQWPENNVDPENTAELRKLPLGLKIQLTV
AGTDYEWIYRLIDRSQDSQ

Nucleotide


Download         Length: 780 bp        

>NTDB_id=302023 DS737_RS07655 WP_113997232.1 1672814..1673593(+) (xcpW) [Acinetobacter haemolyticus strain HW-2A]
ATGAATAATAAAAACAATAATATGCAAATCTCAAAGTTTCACTTTGTTAATCCTCGCACTCAAAGCCTAGCTTTTCGTCT
TGCGGAGCGGTCGAGCAGTGCTCGACTTAATCGTGATCACTCCGAACATAGTTCGTCATCTTGCGCTCGGACAAAGTTTC
ACTTTGTTAATCCTCGCTCAGGATTTACGTTGGTTGAGTTGCTGGTTGCAATTGCAATTTTTGCAGTTCTTTCTATGTTA
GGTTGGAAAGTATTTGATTATTTGTTAAAAGTGAAAGATCGAAATGCTGAACATGAAGTGAATTTGTTTGCATTACAAGA
CGCTTATCAGCAGATCTTGCGAGATAGTTTGCAGATCATCCCTTTAACAGCAAATGATGGAAGGCAATTGCAAGCTGCAT
TGGTACTTAATGATCAGGTTTTTATGTTTAGTAAAGCTGGTGTTTCTGATCCGCTTAAGCAAGGGTTGTCGCCATACGAG
CGTATCGAATATCGTTTTGATGAGTCTCAAAAAAGACTATATCGATTGAAATACACAAATCTAAATATTCCAAATCGTGT
GCAGCCGATGTCAAGTGCATTGTTGGATAATGTTGAGCGCTTTAAAGTATCTGTTTTCAATCCACAAGAGTTAATGCAGT
GGCCTGAAAATAATGTAGATCCAGAAAACACGGCTGAATTAAGAAAGTTACCATTAGGATTGAAAATTCAATTGACTGTT
GCTGGTACAGATTATGAGTGGATCTATCGTCTGATCGATCGTAGTCAGGATAGTCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(114-243)

Prokaryotic N-terminal methylation motif (N_methyl)

(58-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

65.368

89.189

0.583

Multiple sequence alignment