Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   DSQ35_RS06565 Genome accession   NZ_CP030866
Coordinates   1275595..1276110 (-) Length   171 a.a.
NCBI ID   WP_002888104.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CS17     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1270595..1281110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSQ35_RS06550 (DSQ35_1293) - 1270707..1272521 (-) 1815 WP_260383871.1 motility associated factor glycosyltransferase family protein -
  DSQ35_RS06555 (DSQ35_1294) - 1272518..1274341 (-) 1824 WP_260383872.1 motility associated factor glycosyltransferase family protein -
  DSQ35_RS06560 (DSQ35_1295) - 1274351..1275595 (-) 1245 WP_087696103.1 DUF2920 family protein -
  DSQ35_RS06565 (DSQ35_1296) ctsG 1275595..1276110 (-) 516 WP_002888104.1 type II secretion system protein Machinery gene
  DSQ35_RS06570 (DSQ35_1297) tsaD 1276111..1277118 (-) 1008 WP_002868457.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  DSQ35_RS06575 (DSQ35_1299) - 1277115..1278510 (-) 1396 Protein_1279 M99 family carboxypeptidase catalytic domain-containing protein -
  DSQ35_RS06580 (DSQ35_1300) dxr 1278512..1279582 (-) 1071 WP_002860792.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  DSQ35_RS06585 (DSQ35_1301) cdsA 1279579..1280304 (-) 726 WP_002875974.1 phosphatidate cytidylyltransferase -
  DSQ35_RS06590 (DSQ35_1302) - 1280313..1280651 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18636.48 Da        Isoelectric Point: 6.4682

>NTDB_id=301963 DSQ35_RS06565 WP_002888104.1 1275595..1276110(-) (ctsG) [Campylobacter jejuni strain CS17]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=301963 DSQ35_RS06565 WP_002888104.1 1275595..1276110(-) (ctsG) [Campylobacter jejuni strain CS17]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAACAACCTTAAAACTTTGATTAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942

Multiple sequence alignment