Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   ETT64_RS01775 Genome accession   NZ_CP035435
Coordinates   321406..323859 (-) Length   817 a.a.
NCBI ID   WP_002983069.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm64.3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 316406..328859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT64_RS01760 (ETT64_01760) pflB 317109..319436 (-) 2328 WP_002988233.1 formate C-acetyltransferase -
  ETT64_RS01765 (ETT64_01765) dinB 319646..320740 (+) 1095 WP_020905451.1 DNA polymerase IV -
  ETT64_RS01770 (ETT64_01770) - 320833..321315 (-) 483 WP_136293103.1 hypothetical protein -
  ETT64_RS01775 (ETT64_01775) recD/recD2/recDB 321406..323859 (-) 2454 WP_002983069.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ETT64_RS01780 (ETT64_01780) lepB 323917..324510 (-) 594 WP_009880473.1 signal peptidase I -
  ETT64_RS01785 (ETT64_01785) rnhC 324521..325423 (-) 903 WP_063812157.1 ribonuclease HIII -
  ETT64_RS01790 (ETT64_01790) - 325580..325888 (+) 309 WP_002993251.1 hypothetical protein -
  ETT64_RS01795 (ETT64_01795) - 325891..326436 (+) 546 WP_002993250.1 CvpA family protein -

Sequence

Protein


Download         Length: 817 a.a.        Molecular weight: 91448.34 Da        Isoelectric Point: 4.5955

>NTDB_id=301635 ETT64_RS01775 WP_002983069.1 321406..323859(-) (recD/recD2/recDB) [Streptococcus pyogenes strain emm64.3]
MEYVFTGTVDRIIFENQANFFKILLLAIEDTDSDIDDFEIIITGTMADIIEGDDYTFWGELTQHPKYGQQLKLSRYQKIK
PSSSGLVNYFSSDHFKGIGKKTAEKIIALYGHNTIDHILEDPSKLETISGLSKANRQAFVAKLKLNYGTEQLIAGLVELG
LSNRFAFQAFEKYKEEALDLVKENPYQLVEDLQGFGFKMADALAENLGIESDSPKRFRAALLHCLLEESVSRGDTYVQAR
QLLDFAITLLEDARQVECDPAAVAEQLSELIIEGKIKNSDTKLFDASLYFAEEGIANNISRLLDTPLSQSFSHDTIQTTI
QAVQKDFAITYDQVQQEAITKALTSKVFLLTGGPGTGKTTVIRGILQAYANLHQIDLDKKDLPILLAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDNDYQAMEDYLDCDLLIVDEFSMVDTWLANQLLGAINSTTQVIIVGDSDQLPSVGPGQVLSDLL
KVNSLPQIALQKIFRQSQESTIVNLADQMRRGILAADFRDKKADRSYFEAQAAFIPDMIQKIVLSAIKSGIPAEEIQILA
PMYKGQAGINHLNQLMQELLNPLQGQTEFLFNDTYFRKGDKVLHLVNDAQLNVFNGDIGYITDLIPAKYTESKQDELILD
FDGSEVTYPRNEWLKLTLAYAMSIHKSQGSEFQVVILPITRQSGRLLQRNVIYTAITRSKSKLILLGEYTAFEYAIKHEG
DKRQTYLIERFQEQSDLASSQPNQELKSKEQTSLFSNTATLEDDSQKSSSQSTNSNPTENSQSDNDDFRLTPENYSTIDS
MIGLTESDIALFFQKKS

Nucleotide


Download         Length: 2454 bp        

>NTDB_id=301635 ETT64_RS01775 WP_002983069.1 321406..323859(-) (recD/recD2/recDB) [Streptococcus pyogenes strain emm64.3]
ATGGAATACGTTTTTACAGGTACTGTTGATCGTATCATTTTTGAAAACCAGGCTAATTTCTTTAAAATTCTCCTCCTTGC
CATTGAGGATACAGACAGTGACATTGACGACTTTGAAATCATTATCACAGGAACGATGGCTGACATTATTGAAGGAGATG
ACTACACCTTTTGGGGAGAATTGACCCAGCACCCTAAATATGGACAGCAACTCAAACTAAGCCGTTACCAAAAAATCAAA
CCTAGTTCATCTGGTTTGGTTAATTATTTCTCTAGTGACCATTTTAAGGGGATTGGTAAAAAAACAGCGGAGAAAATCAT
TGCACTATATGGTCATAATACCATTGACCATATTTTAGAAGACCCAAGCAAATTAGAAACTATCTCTGGCCTATCTAAGG
CTAATCGTCAAGCCTTTGTCGCTAAACTAAAATTGAATTACGGCACAGAGCAACTGATTGCTGGTCTCGTCGAACTTGGC
CTTAGCAACCGTTTTGCCTTTCAAGCGTTTGAGAAGTACAAAGAAGAGGCTCTTGACCTTGTTAAAGAAAATCCCTATCA
ATTAGTCGAAGATCTACAAGGTTTTGGGTTTAAGATGGCAGATGCTCTTGCTGAAAACTTAGGGATTGAGAGCGACTCTC
CAAAACGTTTTCGTGCTGCCCTCCTGCACTGCCTCTTGGAAGAATCCGTCAGTCGAGGAGACACTTATGTCCAAGCACGA
CAATTATTAGACTTTGCCATCACACTCCTTGAAGATGCACGTCAAGTAGAATGTGATCCTGCTGCTGTGGCTGAACAACT
AAGCGAGTTAATCATAGAGGGCAAAATCAAAAACAGTGACACCAAATTGTTTGATGCTAGCCTTTATTTTGCTGAAGAAG
GAATTGCTAACAACATCTCTCGTCTCTTAGATACTCCTTTAAGTCAGTCATTTAGTCATGATACCATTCAAACAACCATC
CAAGCCGTTCAAAAAGACTTTGCCATCACCTATGACCAAGTGCAGCAAGAAGCCATTACTAAGGCCTTAACCAGCAAGGT
CTTTCTCCTAACAGGTGGTCCCGGAACAGGAAAAACAACTGTTATTCGAGGCATTTTGCAGGCTTACGCGAACCTGCATC
AGATTGATTTGGATAAAAAAGACCTTCCTATCTTGTTAGCAGCTCCAACAGGTCGAGCTGCACGTCGCATGAATGAGTTG
ACTGGACTTCCTAGCGCAACCATCCACAGGCACTTAGGCCTCAATGGCGACAACGATTACCAAGCCATGGAGGATTATCT
GGACTGCGACTTGCTGATTGTCGATGAATTTTCAATGGTGGATACCTGGCTTGCCAACCAGTTGTTAGGAGCGATTAACT
CAACAACTCAAGTGATTATTGTCGGAGATAGTGACCAGCTTCCTTCGGTTGGACCCGGTCAAGTCCTGTCAGATCTTTTA
AAAGTCAATAGCCTGCCCCAAATCGCCTTACAAAAGATATTTCGTCAATCCCAAGAATCTACTATTGTCAATTTGGCAGA
CCAGATGCGTCGAGGAATCTTAGCTGCTGACTTTCGTGATAAAAAAGCTGACCGTTCTTATTTTGAAGCCCAAGCAGCCT
TTATCCCTGACATGATTCAAAAAATTGTCCTATCTGCTATTAAAAGTGGCATCCCTGCTGAGGAAATTCAAATTTTAGCG
CCTATGTACAAAGGACAAGCTGGCATCAATCATCTTAATCAACTCATGCAAGAACTTCTCAATCCCTTGCAAGGACAAAC
AGAATTTCTGTTCAATGATACGTATTTTCGTAAAGGTGATAAAGTCCTGCACTTAGTCAACGATGCTCAGTTGAATGTCT
TTAACGGGGATATTGGTTATATTACAGATTTGATTCCTGCTAAATACACCGAATCTAAGCAAGACGAATTAATCTTAGAT
TTTGACGGTAGCGAAGTCACGTACCCTAGAAATGAATGGCTAAAATTAACCCTGGCCTATGCCATGAGCATTCATAAATC
GCAAGGGAGTGAGTTTCAAGTGGTGATTTTACCTATCACACGCCAAAGCGGCCGACTCTTGCAACGAAATGTGATTTACA
CGGCCATTACTCGGTCTAAAAGTAAGTTAATTCTGTTGGGAGAATATACTGCCTTTGAGTATGCTATTAAACACGAAGGC
GATAAACGCCAAACCTACTTGATCGAACGCTTCCAAGAACAATCCGACTTAGCCTCCTCTCAACCTAACCAAGAGCTAAA
ATCAAAAGAGCAGACCTCCCTTTTTTCTAATACGGCAACCCTTGAGGACGACTCTCAAAAATCTTCCTCTCAATCAACAA
ACTCTAACCCCACTGAGAACTCTCAGTCAGATAATGATGATTTTAGGTTAACACCTGAGAATTATTCGACTATCGATTCG
ATGATAGGGCTTACAGAGTCAGATATTGCCCTCTTTTTCCAGAAAAAATCCTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-706)

AAA domain (AAA_30)

(331-522)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-641)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.91

92.289

0.387

Multiple sequence alignment