Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SPT_RS08540 Genome accession   NC_012469
Coordinates   1632189..1633460 (+) Length   423 a.a.
NCBI ID   WP_001113206.1    Uniprot ID   -
Organism   Streptococcus pneumoniae Taiwan19F-14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1627189..1638460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPT_RS08500 (SPT_1709) - 1627380..1628414 (-) 1035 WP_000747916.1 ATP-binding protein -
  SPT_RS08505 (SPT_1710) - 1628533..1628682 (-) 150 Protein_1633 7,8-dihydro-8-oxoguanine-triphosphatase -
  SPT_RS08510 (SPT_1711) - 1628663..1629751 (-) 1089 WP_000719711.1 site-2 protease family protein -
  SPT_RS08515 (SPT_1712) - 1629770..1630240 (-) 471 WP_000257114.1 DUF3013 family protein -
  SPT_RS08520 (SPT_1713) - 1630531..1630983 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  SPT_RS08525 (SPT_1714) - 1631020..1631199 (-) 180 WP_001132282.1 type II toxin-antitoxin system HicA family toxin -
  SPT_RS08530 (SPT_1715) - 1631336..1631515 (-) 180 WP_001048906.1 hypothetical protein -
  SPT_RS08535 (SPT_1716) - 1631680..1631919 (-) 240 WP_000818079.1 hypothetical protein -
  SPT_RS08540 (SPT_1717) rarA 1632189..1633460 (+) 1272 WP_001113206.1 replication-associated recombination protein A Machinery gene
  SPT_RS08550 (SPT_1719) - 1634007..1635326 (-) 1320 WP_000502563.1 glycoside hydrolase family 32 protein -
  SPT_RS08555 (SPT_1720) - 1635336..1636952 (-) 1617 WP_000669748.1 ABC transporter substrate-binding protein -
  SPT_RS08560 (SPT_1721) - 1636981..1637871 (-) 891 WP_000797961.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46999.46 Da        Isoelectric Point: 5.9471

>NTDB_id=30159 SPT_RS08540 WP_001113206.1 1632189..1633460(+) (rarA) [Streptococcus pneumoniae Taiwan19F-14]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALTDLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDRLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=30159 SPT_RS08540 WP_001113206.1 1632189..1633460(+) (rarA) [Streptococcus pneumoniae Taiwan19F-14]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCGGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACAACTGAAAATCCTTTCTTTTCCG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTTGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCCCAGAAGATTGGGTTCCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTACTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTACGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCGTTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.279

99.054

0.567

Multiple sequence alignment