Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ETT65_RS02475 Genome accession   NZ_CP035434
Coordinates   442774..443556 (+) Length   260 a.a.
NCBI ID   WP_002983278.1    Uniprot ID   A2RCV3
Organism   Streptococcus pyogenes strain emm75.1     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 437774..448556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT65_RS02455 (ETT65_02455) - 438111..439076 (-) 966 WP_002983258.1 asparaginase -
  ETT65_RS02460 (ETT65_02460) - 439148..440536 (+) 1389 WP_009881044.1 Cof-type HAD-IIB family hydrolase -
  ETT65_RS02465 (ETT65_02465) - 440659..441111 (-) 453 WP_002992571.1 universal stress protein -
  ETT65_RS02470 (ETT65_02470) - 441342..442556 (+) 1215 WP_011184883.1 pyridoxal phosphate-dependent aminotransferase -
  ETT65_RS02475 (ETT65_02475) codY 442774..443556 (+) 783 WP_002983278.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ETT65_RS02480 (ETT65_02480) - 443703..444257 (+) 555 WP_002983281.1 cysteine hydrolase family protein -
  ETT65_RS02490 (ETT65_02490) - 444734..445036 (+) 303 Protein_435 putative PEP-binding protein -
  ETT65_RS02495 (ETT65_02495) gatC 445268..445570 (+) 303 WP_136075969.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  ETT65_RS02500 (ETT65_02500) gatA 445570..447036 (+) 1467 WP_136075970.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  ETT65_RS02505 (ETT65_02505) gatB 447036..448475 (+) 1440 WP_063811844.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 28633.76 Da        Isoelectric Point: 4.5611

>NTDB_id=301545 ETT65_RS02475 WP_002983278.1 442774..443556(+) (codY) [Streptococcus pyogenes strain emm75.1]
MPNLLEKTRKITSILQRSVDSLETELPYNTMASRLADIIDCNACIINGGGTLLGYAMKYKTNTDRVEEFFEAKQFPDTYV
KAASRVYDTEANLSVENELTIFPVESKDTYPGGLTTIAPIYGGGMRLGSLIIWRNDNEFSDDDLILVEISSTVVGIQLLN
LQTENLEDTIRKQTAVNMAINTLSYSEMKAVAAILGELDGNEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFAKLKEF

Nucleotide


Download         Length: 783 bp        

>NTDB_id=301545 ETT65_RS02475 WP_002983278.1 442774..443556(+) (codY) [Streptococcus pyogenes strain emm75.1]
ATGCCTAACTTATTAGAAAAAACTCGTAAAATCACATCTATTTTGCAGCGTTCCGTAGATAGCCTAGAAACAGAATTACC
GTATAACACAATGGCATCTCGCCTAGCAGATATCATTGACTGCAATGCTTGTATTATCAATGGCGGCGGCACATTGCTTG
GTTATGCCATGAAATATAAAACTAACACTGATCGTGTTGAGGAATTTTTTGAAGCTAAACAATTTCCAGATACTTATGTA
AAGGCTGCTAGCCGAGTTTACGATACAGAAGCTAACCTTTCTGTCGAAAATGAATTGACTATATTCCCTGTTGAGTCTAA
AGACACTTATCCAGGAGGTCTAACGACTATTGCGCCGATTTATGGTGGAGGGATGCGCCTTGGATCACTCATTATCTGGC
GTAATGACAATGAGTTTAGTGATGATGATTTGATTTTGGTTGAGATCTCAAGTACTGTTGTGGGGATTCAACTATTAAAT
CTTCAGACAGAAAACTTAGAAGACACCATCCGTAAACAAACAGCGGTCAACATGGCAATTAATACGCTTTCTTATTCAGA
AATGAAAGCTGTTGCAGCAATTCTTGGAGAGTTAGATGGTAACGAAGGACGATTGACAGCTTCTGTTATTGCTGATCGTA
TTGGTATTACCCGTTCTGTTATTGTCAATGCTCTGCGTAAACTAGAAAGTGCAGGGATTATTGAAAGTCGTTCTCTTGGT
ATGAAAGGGACATACCTCAAAGTTATCAACGAAGGTATTTTTGCTAAATTAAAAGAATTTTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-260)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A2RCV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

66.148

98.846

0.654
  codY Bacillus subtilis subsp. subtilis str. 168

51.373

98.077

0.504