Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   DPR03_RS05720 Genome accession   NZ_CP030754
Coordinates   1189093..1189728 (+) Length   211 a.a.
NCBI ID   WP_004815587.1    Uniprot ID   N8WKT7
Organism   Acinetobacter schindleri strain H3     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1184093..1194728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPR03_RS05685 kdsB 1184237..1184998 (+) 762 WP_071320092.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DPR03_RS05690 - 1185013..1185996 (+) 984 WP_071320091.1 DNA polymerase III subunit delta' -
  DPR03_RS05695 - 1186014..1186355 (+) 342 WP_004815576.1 PilZ domain-containing protein -
  DPR03_RS05700 - 1186383..1187156 (+) 774 WP_004815579.1 TatD family hydrolase -
  DPR03_RS05705 - 1187197..1187811 (+) 615 WP_071320090.1 TetR/AcrR family transcriptional regulator -
  DPR03_RS05710 - 1187821..1188378 (+) 558 WP_071320089.1 type II secretion system protein -
  DPR03_RS05715 gspI 1188548..1189096 (+) 549 WP_171260585.1 type II secretion system minor pseudopilin GspI -
  DPR03_RS05720 xcpW 1189093..1189728 (+) 636 WP_004815587.1 type II secretion system protein GspJ Machinery gene
  DPR03_RS05725 gspK 1189738..1190685 (+) 948 WP_071320087.1 type II secretion system minor pseudopilin GspK -
  DPR03_RS05730 - 1190833..1191429 (+) 597 WP_048881306.1 6-pyruvoyl trahydropterin synthase family protein -
  DPR03_RS05735 ung 1191475..1192191 (+) 717 WP_071320086.1 uracil-DNA glycosylase -
  DPR03_RS05740 - 1192188..1193312 (+) 1125 WP_071320085.1 enoyl-CoA hydratase/isomerase family protein -
  DPR03_RS05745 tadA 1193316..1193837 (+) 522 WP_071320084.1 tRNA adenosine(34) deaminase TadA -
  DPR03_RS05750 - 1193889..1194320 (+) 432 WP_071320083.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24088.20 Da        Isoelectric Point: 4.8547

>NTDB_id=301324 DPR03_RS05720 WP_004815587.1 1189093..1189728(+) (xcpW) [Acinetobacter schindleri strain H3]
MKKNGFTLVELLVAIAIFAVLSALGWQVFDHIRVTRDQNTLHEQKLNQLQQGYQQILRDMVQTVPLTANVNGDIQPALVL
QDGRFNFSKTGVTDPLEQGIAPDERVEYQYRADEQKVYRLKFRNLNQTGRDQPESSILLSDVEQFQITALNPNEITQWPE
SGLDLNRTENKQLLPKGIKINLIVQGVQYEWLFSLLNTDYLSNNTNNIGSS

Nucleotide


Download         Length: 636 bp        

>NTDB_id=301324 DPR03_RS05720 WP_004815587.1 1189093..1189728(+) (xcpW) [Acinetobacter schindleri strain H3]
ATGAAAAAAAATGGATTTACCCTGGTTGAGCTGCTGGTTGCGATTGCAATCTTTGCTGTATTGTCTGCATTGGGATGGCA
GGTCTTTGATCATATCCGGGTCACGCGCGATCAAAATACCCTTCATGAACAAAAGCTAAATCAATTACAGCAGGGCTATC
AGCAGATTCTGCGTGATATGGTGCAAACAGTACCCTTAACCGCAAATGTAAATGGTGATATTCAGCCAGCTTTAGTATTG
CAAGATGGTCGTTTTAATTTTAGTAAGACTGGTGTTACGGATCCGCTGGAACAAGGCATCGCGCCGGATGAGCGGGTGGA
ATATCAATATCGGGCGGATGAGCAAAAAGTCTATCGGCTTAAATTCAGGAACCTGAACCAGACCGGACGCGATCAACCTG
AATCGAGCATATTGCTGAGTGATGTAGAGCAGTTTCAAATTACTGCACTGAATCCAAATGAAATCACACAATGGCCGGAA
AGTGGACTGGATTTAAATCGTACTGAAAACAAGCAGCTTTTACCGAAAGGCATCAAGATCAATCTGATTGTACAGGGTGT
ACAATATGAATGGTTGTTCAGTCTGCTGAACACAGATTATCTGTCAAATAATACCAATAATATAGGCAGCTCATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(58-192)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8WKT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

56.701

91.943

0.521

Multiple sequence alignment