Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   BSPH_RS18020 Genome accession   NC_010382
Coordinates   3751705..3754137 (-) Length   810 a.a.
NCBI ID   WP_036162221.1    Uniprot ID   W7S9U9
Organism   Lysinibacillus sphaericus C3-41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3746705..3759137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSPH_RS18010 (Bsph_3874) corA 3748717..3749682 (-) 966 WP_012295396.1 magnesium/cobalt transporter CorA -
  BSPH_RS18015 (Bsph_3875) hpaB 3750149..3751582 (-) 1434 WP_036162219.1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component -
  BSPH_RS18020 (Bsph_3876) recD2 3751705..3754137 (-) 2433 WP_036162221.1 ATP-dependent RecD-like DNA helicase Machinery gene
  BSPH_RS18025 (Bsph_3877) hisA 3754327..3755106 (+) 780 WP_012295399.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase -
  BSPH_RS18030 (Bsph_3878) - 3755090..3755377 (+) 288 WP_012295400.1 hypothetical protein -
  BSPH_RS18035 (Bsph_3879) - 3755645..3756382 (+) 738 WP_012295401.1 GTP pyrophosphokinase family protein -
  BSPH_RS18040 (Bsph_3880) - 3756479..3757933 (-) 1455 WP_012295402.1 MDR family MFS transporter -
  BSPH_RS18045 (Bsph_3881) - 3758115..3758774 (-) 660 WP_012295403.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 90902.40 Da        Isoelectric Point: 4.8923

>NTDB_id=30087 BSPH_RS18020 WP_036162221.1 3751705..3754137(-) (recD2) [Lysinibacillus sphaericus C3-41]
MTDHLDLFELNKFFILGRPIVSIFHNTQNMYSIIRVKIQETNLQYEDKEIIVVGYFPPLQMDEQYRFTGILKQHPKYGAQ
FQIETFTKEVPATEQGIIHYLSSDLFVGIGRKTAETIVEKLGANALRLILEDPSALDVVPRLSSEKKEVIHRTIEQNLGL
ERVMIQLNEWGFGPQLGMKIYQTYRTEAVELLTENPYRLIEDVEGVGFFRADELGAKLGITGKHPDRVKAAILHILNTAA
LSDGHVYLDAEHVLPLVKEMLEQSQRQEIPFEDISKACIELREDGKVCGEETRLYLPSLYFSEVGIASKILTLVERNSKT
EHFSKDEIRKAIGETEELLQVTYAETQANAIEQALNSAVMILTGGPGTGKTTVVRGVVEVYAKLHGLSLNPKEYAQKEEP
FPIILCAPTGRAAKRLAESTELPAMTIHRLLGFTGQEKEEETEREVTGKLIIVDEMSMVDTWLAHQLLKALHEDVQVVFV
GDQDQLPPVGPGQVLKDLLASKQLPTVELTDVYRQAEGSTIIELAHQIKKGTIPQDLTSKTTDRSFIKSSVDQVGNVVTQ
VVKSAVAKGQEIRNIQVLAPMYKGPAGIDNLNKMIQELINPNDTGTRKELVFGDVTYRIKDKVLQLVNQPESNVFNGDMG
EVISIIKAKETVEKQDLLIVSFDGIEVTYQRSDLNQLTLAYCCSIHKSQGSEFQTVIMPVVKGYSKMLRRNLLYTGITRA
KNFLILCGEPDVLADGLQRTDDLQRFTSLRARLNPMDVDEVMVEVEAVPVKQEAVQEIAIEDHKLTVETAPYIHPMIGMD
DVSPYDFLEM

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=30087 BSPH_RS18020 WP_036162221.1 3751705..3754137(-) (recD2) [Lysinibacillus sphaericus C3-41]
ATGACAGATCATCTCGATTTATTTGAACTCAATAAATTTTTTATTCTCGGACGTCCGATCGTCTCTATTTTTCATAACAC
CCAAAATATGTATTCCATTATTCGAGTGAAAATTCAAGAGACAAACTTACAATATGAAGATAAAGAAATTATTGTTGTTG
GCTATTTTCCACCGTTACAAATGGATGAGCAATACCGCTTTACAGGTATATTAAAACAGCATCCTAAATATGGTGCACAA
TTTCAAATCGAGACATTTACAAAAGAGGTACCCGCTACTGAACAAGGAATTATTCATTATTTATCCAGTGACCTATTTGT
GGGAATTGGGAGAAAAACAGCTGAAACCATTGTTGAAAAACTGGGTGCTAATGCATTACGCCTTATTTTAGAAGATCCGA
GTGCACTGGATGTTGTTCCACGTTTATCATCTGAAAAAAAAGAAGTGATTCATCGGACGATTGAGCAAAACCTTGGTTTA
GAACGGGTAATGATACAGTTGAATGAATGGGGCTTTGGTCCACAGCTGGGAATGAAGATCTATCAAACCTATCGAACGGA
GGCTGTTGAATTACTAACAGAAAATCCATATCGCTTGATAGAAGATGTGGAAGGTGTTGGGTTCTTTCGAGCAGATGAGC
TTGGTGCAAAGCTAGGGATTACCGGTAAACATCCTGATCGTGTCAAAGCAGCGATTTTACATATTTTAAATACGGCTGCA
TTATCTGACGGGCATGTATATTTAGACGCGGAGCATGTACTACCACTTGTAAAGGAAATGCTTGAACAAAGTCAACGTCA
GGAAATTCCGTTTGAAGACATCTCAAAAGCATGTATTGAGCTACGGGAAGATGGAAAAGTTTGCGGAGAAGAAACAAGGT
TATATTTGCCTTCACTTTATTTTTCTGAGGTAGGAATTGCCTCCAAAATATTGACGCTTGTTGAACGAAATAGCAAGACT
GAACATTTTAGCAAAGATGAGATTCGTAAAGCGATTGGTGAAACTGAGGAACTACTCCAGGTGACATATGCTGAAACACA
AGCAAATGCTATTGAACAGGCTTTAAATTCAGCTGTAATGATTTTAACAGGTGGACCTGGTACGGGTAAAACGACTGTTG
TACGTGGGGTTGTTGAAGTGTATGCGAAGCTTCATGGTTTATCATTGAATCCAAAAGAATATGCTCAAAAAGAGGAGCCT
TTTCCCATTATCCTTTGTGCACCCACTGGGCGAGCTGCCAAGCGCTTAGCTGAATCGACTGAACTACCAGCTATGACCAT
TCATCGTTTACTCGGCTTTACAGGTCAAGAAAAAGAAGAAGAGACTGAACGGGAGGTAACAGGTAAGCTTATTATTGTAG
ATGAAATGTCCATGGTGGATACTTGGCTTGCTCATCAGTTATTAAAAGCTTTACATGAGGATGTACAGGTTGTCTTTGTA
GGGGACCAGGACCAATTACCGCCTGTAGGACCAGGACAGGTATTAAAGGATTTATTAGCATCCAAGCAACTCCCAACGGT
GGAATTGACAGATGTTTACCGACAAGCAGAGGGTTCTACCATTATTGAATTAGCCCATCAAATAAAAAAAGGAACCATCC
CGCAAGATTTAACATCGAAAACTACTGATCGCTCGTTTATTAAATCTTCCGTCGATCAGGTTGGAAATGTTGTGACACAG
GTAGTAAAAAGTGCCGTTGCTAAAGGGCAAGAAATTCGTAATATTCAGGTGTTAGCACCGATGTATAAAGGTCCCGCTGG
CATTGATAATTTAAATAAGATGATTCAAGAGCTTATTAATCCTAATGATACAGGGACACGAAAGGAACTTGTCTTTGGGG
ACGTAACGTATCGGATAAAGGATAAAGTTCTGCAGCTAGTCAATCAGCCTGAAAGTAATGTTTTTAATGGGGATATGGGA
GAGGTCATTAGTATTATTAAGGCAAAGGAGACAGTAGAAAAACAAGATTTACTAATTGTATCCTTTGATGGCATTGAAGT
GACCTATCAACGCAGTGACCTCAATCAATTGACACTTGCTTATTGCTGCTCCATTCATAAATCTCAAGGTTCAGAGTTTC
AAACCGTCATTATGCCTGTTGTCAAAGGGTATTCGAAAATGCTGCGGCGGAATCTTTTATACACAGGTATTACAAGAGCG
AAAAACTTTTTAATTTTATGTGGGGAACCAGACGTTCTAGCAGATGGCTTGCAGCGGACAGATGATTTACAGCGTTTTAC
TTCGTTGCGTGCTCGATTAAATCCAATGGATGTCGACGAAGTAATGGTTGAGGTTGAGGCAGTTCCAGTAAAACAAGAGG
CTGTGCAAGAAATAGCTATCGAGGACCATAAATTAACAGTTGAAACAGCTCCTTATATTCATCCAATGATTGGGATGGAT
GATGTCTCCCCCTATGATTTTTTGGAGATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-661)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

AAA domain (AAA_30)

(343-549)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W7S9U9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.088

100

0.523

Multiple sequence alignment