Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SP70585_RS14000 Genome accession   NC_012468
Coordinates   1442550..1443272 (-) Length   240 a.a.
NCBI ID   WP_001010368.1    Uniprot ID   -
Organism   Streptococcus pneumoniae 70585     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1437550..1448272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP70585_RS07735 (SP70585_1563) - 1440124..1441290 (-) 1167 WP_000521384.1 MalY/PatB family protein -
  SP70585_RS07740 (SP70585_1564) - 1441298..1442392 (-) 1095 WP_000031968.1 cystathionine gamma-synthase -
  SP70585_RS14000 rcrP 1442550..1443272 (-) 723 WP_001010368.1 ABC transporter ATP-binding protein Regulator
  SP70585_RS07750 - 1443459..1444225 (-) 767 Protein_1484 ABC transporter ATP-binding protein -
  SP70585_RS07755 (SP70585_1567) amiA 1444397..1446355 (-) 1959 WP_000748873.1 peptide ABC transporter substrate-binding protein Regulator
  SP70585_RS07760 (SP70585_1568) - 1446558..1448180 (-) 1623 WP_000017807.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27287.14 Da        Isoelectric Point: 5.0452

>NTDB_id=30086 SP70585_RS14000 WP_001010368.1 1442550..1443272(-) (rcrP) [Streptococcus pneumoniae 70585]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLEQFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRFLSGGQSQRLQIARTYLKDAEIL
IFDESTANLDADSEYAIISILYSALKEKTVVIIAHRLSTVKDVDCIFFLEERKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=30086 SP70585_RS14000 WP_001010368.1 1442550..1443272(-) (rcrP) [Streptococcus pneumoniae 70585]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCAGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTATTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGATTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAACCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAATCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTATCCTCTATTCTGCATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATCGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGAGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.402

99.583

0.363

Multiple sequence alignment