Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CHE40_RS04790 Genome accession   NZ_CP030233
Coordinates   971007..971612 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica strain SA20101045     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 966007..976612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHE40_RS04770 (CHE40_04770) - 966402..968162 (-) 1761 WP_000156448.1 Lon protease family protein -
  CHE40_RS04775 (CHE40_04775) matP 968348..968800 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  CHE40_RS04780 (CHE40_04780) ompA 968872..969924 (-) 1053 WP_023193195.1 porin OmpA -
  CHE40_RS04785 (CHE40_04785) sulA 970281..970790 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  CHE40_RS04790 (CHE40_04790) sxy/tfoX 971007..971612 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  CHE40_RS04795 (CHE40_04795) yccS 971599..973752 (-) 2154 WP_000950876.1 YccS family putative transporter -
  CHE40_RS04800 (CHE40_04800) - 973771..974217 (-) 447 WP_023243628.1 YccF domain-containing protein -
  CHE40_RS04805 (CHE40_04805) helD 974341..976395 (+) 2055 WP_024155604.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=300249 CHE40_RS04790 WP_001202375.1 971007..971612(+) (sxy/tfoX) [Salmonella enterica strain SA20101045]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=300249 CHE40_RS04790 WP_001202375.1 971007..971612(+) (sxy/tfoX) [Salmonella enterica strain SA20101045]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCCCCCGCCTGGCTCATGTTCATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCGCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCTAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment