Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CHD70_RS25480 Genome accession   NZ_CP030203
Coordinates   4821308..4821838 (-) Length   176 a.a.
NCBI ID   WP_000168322.1    Uniprot ID   -
Organism   Salmonella enterica strain SA20083530     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4816308..4826838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHD70_RS25460 (CHD70_25470) siiC 4816947..4818266 (-) 1320 WP_001749704.1 SPI-4 type I secretion system protein SiiC -
  CHD70_RS25465 (CHD70_25475) - 4818256..4819644 (-) 1389 WP_000875198.1 MotA/TolQ/ExbB proton channel family protein -
  CHD70_RS25470 (CHD70_25480) siiA 4819641..4820273 (-) 633 WP_000389240.1 SPI-4 type I secretion system auxiliary protein SiiA -
  CHD70_RS25480 (CHD70_25490) ssb 4821308..4821838 (-) 531 WP_000168322.1 single-stranded DNA-binding protein SSB1 Machinery gene
  CHD70_RS25490 (CHD70_25500) uvrA 4822086..4824911 (+) 2826 WP_000357722.1 excinuclease ABC subunit UvrA -
  CHD70_RS25495 (CHD70_25505) - 4825043..4825498 (+) 456 WP_000432195.1 hypothetical protein -
  CHD70_RS25500 (CHD70_25510) - 4825485..4825823 (+) 339 WP_000146597.1 hypothetical protein -
  CHD70_RS25505 (CHD70_25515) - 4825824..4826180 (-) 357 WP_000155665.1 MmcQ/YjbR family DNA-binding protein -
  CHD70_RS25510 (CHD70_25520) - 4826183..4826599 (-) 417 WP_000270392.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19074.15 Da        Isoelectric Point: 5.2456

>NTDB_id=300067 CHD70_RS25480 WP_000168322.1 4821308..4821838(-) (ssb) [Salmonella enterica strain SA20083530]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQERYTTEINVPQIGGVMQMLGGRQGGGAPAGGQQQGGWGQPQQPQQPQGGNQFSGGAQSRPQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=300067 CHD70_RS25480 WP_000168322.1 4821308..4821838(-) (ssb) [Salmonella enterica strain SA20083530]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
CGGCGCTGTCGCCAACTTAACGCTGGCTACTTCTGAATCCTGGCGCGATAAGCAGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGGGTGGTGATGTTCGGCAAACTGGCGGAAGTGGCCGGCGAATATCTGCGTAAAGGTTCTCAGGTGTATATC
GAAGGTCAATTGCGTACCCGCAAGTGGACCGATCAGAGTGGCCAGGAACGCTATACGACTGAAATTAACGTTCCGCAGAT
CGGTGGCGTGATGCAGATGCTGGGTGGTCGCCAGGGCGGCGGCGCACCGGCAGGCGGTCAGCAGCAGGGGGGTTGGGGTC
AACCGCAACAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCGCGTCCACAGCAATCCGCGCCA
GCGCCGTCTAACGAACCGCCAATGGATTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.978

100

0.744
  ssb Glaesserella parasuis strain SC1401

60.109

100

0.625
  ssb Neisseria gonorrhoeae MS11

46.448

100

0.483
  ssb Neisseria meningitidis MC58

46.409

100

0.477

Multiple sequence alignment