Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ETA15_RS06810 Genome accession   NZ_CP035403
Coordinates   1296736..1297653 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain SRCM103581     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1291736..1302653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA15_RS06795 (ETA15_06795) trpS 1292316..1293308 (-) 993 WP_026113648.1 tryptophan--tRNA ligase -
  ETA15_RS06800 (ETA15_06800) oppA 1294052..1295689 (+) 1638 WP_017695682.1 oligopeptide ABC transporter substrate-binding protein OppA -
  ETA15_RS06805 (ETA15_06805) oppB 1295797..1296732 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  ETA15_RS06810 (ETA15_06810) amiD 1296736..1297653 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  ETA15_RS06815 (ETA15_06815) oppD 1297658..1298734 (+) 1077 WP_077670618.1 oligopeptide ABC transporter ATP-binding protein OppD -
  ETA15_RS06820 (ETA15_06820) oppF 1298736..1299653 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  ETA15_RS06825 (ETA15_06825) yjbB 1299760..1300977 (+) 1218 WP_080031063.1 MFS transporter -
  ETA15_RS06830 (ETA15_06830) yjbC 1301142..1301719 (+) 578 Protein_1284 GNAT family N-acetyltransferase -
  ETA15_RS06835 (ETA15_06835) spx 1301900..1302295 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=299761 ETA15_RS06810 WP_003232954.1 1296736..1297653(+) (amiD) [Bacillus subtilis strain SRCM103581]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=299761 ETA15_RS06810 WP_003232954.1 1296736..1297653(+) (amiD) [Bacillus subtilis strain SRCM103581]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTCGCAGCCGCTGTTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGAA
GAACAGATGAAATCATGATGCGTATCGCTGACATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGGCTATTTACGATTATTATTGCCATGACGATTACGGGCTGGATTAACATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTCGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGCTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364