Detailed information NTG0299709

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: BVDSYZ_RS08655
• Genome accession: NZ_CP030150
• Coordinates: 1715531..1716310 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain DSYZ
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1710531..1721310

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BVDSYZ_RS08635 (BVDSYZ_08635)	trmFO	1711218..1712525 (+)	1308	WP_012117550.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
BVDSYZ_RS08640 (BVDSYZ_08640)	xerC	1712595..1713512 (+)	918	WP_039251511.1	tyrosine recombinase XerC	-
BVDSYZ_RS08645 (BVDSYZ_08645)	hslV	1713528..1714073 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
BVDSYZ_RS08650 (BVDSYZ_08650)	hslU	1714081..1715493 (+)	1413	WP_254894347.1	HslU--HslV peptidase ATPase subunit	-
BVDSYZ_RS08655 (BVDSYZ_08655)	codY	1715531..1716310 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
BVDSYZ_RS08660 (BVDSYZ_08660)	flgB	1716664..1717053 (+)	390	WP_062623352.1	flagellar basal body rod protein FlgB	-
BVDSYZ_RS08665 (BVDSYZ_08665)	flgC	1717053..1717505 (+)	453	WP_003154259.1	flagellar basal body rod protein FlgC	-
BVDSYZ_RS08670 (BVDSYZ_08670)	fliE	1717516..1717836 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
BVDSYZ_RS08675 (BVDSYZ_08675)	fliF	1717879..1719489 (+)	1611	WP_062623353.1	flagellar basal-body MS-ring/collar protein FliF	-
BVDSYZ_RS08680 (BVDSYZ_08680)	fliG	1719502..1720518 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
BVDSYZ_RS08685 (BVDSYZ_08685)	fliH	1720511..1721266 (+)	756	WP_062623354.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=299709 BVDSYZ_RS08655 WP_003154263.1 1715531..1716310(+) (codY) [Bacillus velezensis strain DSYZ]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=299709 BVDSYZ_RS08655 WP_003154263.1 1715531..1716310(+) (codY) [Bacillus velezensis strain DSYZ]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471