Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   ETA19_RS15210 Genome accession   NZ_CP035401
Coordinates   2912066..2913070 (-) Length   334 a.a.
NCBI ID   WP_003229285.1    Uniprot ID   P25144
Organism   Bacillus subtilis strain SRCM103837     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 2907066..2918070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA19_RS15185 (ETA19_15185) acuA 2907993..2908625 (+) 633 WP_029726417.1 acetoin utilization protein acetyltransferase AcuA -
  ETA19_RS15190 (ETA19_15190) acuB 2908652..2909296 (+) 645 WP_003229294.1 acetoin utilization AcuB family protein -
  ETA19_RS15195 (ETA19_15195) acuC 2909293..2910456 (+) 1164 WP_015251447.1 acetoin utilization protein AcuC -
  ETA19_RS15200 (ETA19_15200) motS 2910467..2911195 (-) 729 WP_128993290.1 flagellar motor protein MotS -
  ETA19_RS15205 (ETA19_15205) motP 2911185..2912003 (-) 819 WP_015714528.1 flagellar motor protein MotP -
  ETA19_RS15210 (ETA19_15210) ccpA 2912066..2913070 (-) 1005 WP_003229285.1 catabolite control protein A Regulator
  ETA19_RS15215 (ETA19_15215) aroX 2913346..2914422 (-) 1077 WP_003223454.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  ETA19_RS15220 (ETA19_15220) ytxJ 2914659..2914985 (-) 327 WP_014480571.1 bacillithiol system redox-active protein YtxJ -
  ETA19_RS15225 (ETA19_15225) ytxH 2915009..2915464 (-) 456 WP_004398549.1 YtxH domain-containing protein -
  ETA19_RS15230 (ETA19_15230) ytxG 2915495..2915917 (-) 423 WP_003229276.1 DUF948 domain-containing protein -
  ETA19_RS15235 (ETA19_15235) murC 2916079..2917377 (-) 1299 WP_003229274.1 UDP-N-acetylmuramate--L-alanine ligase -

Sequence


Protein


Download         Length: 334 a.a.        Molecular weight: 36940.34 Da        Isoelectric Point: 5.0249

>NTDB_id=299533 ETA19_RS15210 WP_003229285.1 2912066..2913070(-) (ccpA) [Bacillus subtilis strain SRCM103837]
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAI
DYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKK
PTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIV
ELPHRIELRKSTKS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=299533 ETA19_RS15210 WP_003229285.1 2912066..2913070(-) (ccpA) [Bacillus subtilis strain SRCM103837]
ATGAGCAATATTACGATCTACGATGTAGCGAGAGAAGCTAATGTAAGCATGGCAACCGTTTCCCGTGTCGTGAACGGCAA
CCCGAATGTAAAACCGACAACGAGAAAAAAAGTCTTGGAAGCCATTGAACGTCTCGGTTACCGTCCAAACGCGGTGGCAA
GAGGGCTGGCAAGTAAAAAAACAACAACTGTAGGTGTCATCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCG
CGCGGAATTGAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGACCAAAACATGGAGAAAGAGCT
GCACTTGTTAAACACAATGCTCGGCAAACAAGTGGACGGCATCGTGTTTATGGGCGGAAACATTACGGACGAGCATGTGG
CGGAATTTAAGCGTTCTCCAGTGCCGATTGTACTTGCCGCTTCTGTAGAAGAGCAGGAGGAAACACCGTCAGTCGCTATC
GATTACGAACAGGCGATTTATGATGCCGTGAAGCTTTTGGTTGATAAAGGACATACAGACATCGCGTTCGTTTCCGGACC
AATGGCAGAACCGATCAACCGTTCGAAAAAACTCCAAGGCTACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATG
AACAATTTGTAGCTGAAGGGGATTACACATATGATTCCGGACTCGAAGCACTGCAGCATCTGATGAGCCTGGATAAAAAA
CCGACAGCCATTCTTTCTGCAACTGATGAAATGGCACTCGGCATTATCCATGCCGCTCAGGATCAGGGCTTATCCATTCC
GGAGGATCTCGACATTATCGGTTTTGATAATACAAGATTAAGCCTCATGGTTCGTCCGCAGCTTTCAACAGTTGTTCAGC
CGACATATGATATCGGCGCCGTTGCGATGAGACTGCTGACGAAGCTCATGAATAAAGAGCCGGTTGAAGAGCATATCGTC
GAACTGCCGCACCGTATAGAGCTTAGAAAGTCAACCAAGTCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  PDB 1ZVV
  PDB 2FEP
  PDB 3OQM
  PDB 3OQN
  PDB 3OQO

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

54.545

98.802

0.539

  ccpA Streptococcus gordonii str. Challis substr. CH1

53.636

98.802

0.53

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

50.602

99.401

0.503


Multiple sequence alignment