Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   DP112_RS06710 Genome accession   NZ_CP030125
Coordinates   1338209..1339048 (-) Length   279 a.a.
NCBI ID   WP_114866632.1    Uniprot ID   -
Organism   Streptococcus suis strain HA1003     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1333209..1344048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS06695 (DP112_06695) pheT 1333397..1335796 (-) 2400 WP_114866629.1 phenylalanine--tRNA ligase subunit beta -
  DP112_RS06700 (DP112_06700) - 1335798..1336319 (-) 522 WP_114866630.1 GNAT family N-acetyltransferase -
  DP112_RS06705 (DP112_06705) pheS 1336866..1337909 (-) 1044 WP_114866631.1 phenylalanine--tRNA ligase subunit alpha -
  DP112_RS06710 (DP112_06710) endA 1338209..1339048 (-) 840 WP_114866632.1 DNA/RNA non-specific endonuclease Machinery gene
  DP112_RS06715 (DP112_06715) - 1339078..1339269 (-) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  DP112_RS06720 (DP112_06720) murA 1339262..1340545 (-) 1284 WP_044673805.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DP112_RS06725 (DP112_06725) - 1340569..1340793 (-) 225 WP_114867022.1 DUF1146 family protein -
  DP112_RS06730 (DP112_06730) - 1340853..1341269 (-) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  DP112_RS06735 (DP112_06735) atpD 1341279..1342685 (-) 1407 WP_024384813.1 F0F1 ATP synthase subunit beta -
  DP112_RS06740 (DP112_06740) - 1342705..1343583 (-) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30250.48 Da        Isoelectric Point: 5.6707

>NTDB_id=299484 DP112_RS06710 WP_114866632.1 1338209..1339048(-) (endA) [Streptococcus suis strain HA1003]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVAEYSYYVNQSKASESTPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGEMVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQVHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYYSGEITVNE

Nucleotide


Download         Length: 840 bp        

>NTDB_id=299484 DP112_RS06710 WP_114866632.1 1338209..1339048(-) (endA) [Streptococcus suis strain HA1003]
ATGGCGAAGAAAAATGTAAAAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTGGCGGGTGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCTGAATATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAGAGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGTGCT
GGAGCATTTATTATTAACGGGAATCAAACGGATTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
AACAGTCCAGGGAGAAATGGTTCCAACAGTAGCCAATGCGCTTTTAGCCAAATCTACACGTCAGTATAAGGACCGTGAAG
AAACAGGAAATGGTCGGACTTCTTGGACACCTGCGGGTTGGCACCAGGTCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGCTTCGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGTCATCTAGAGGCAAAAGCAGCAGATGGAAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGTGGTCTCAG
TATCAACTATTATAGTGGGGAAATTACGGTGAATGAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

70.339

84.588

0.595
  endA Streptococcus pneumoniae D39

70.339

84.588

0.595
  endA Streptococcus pneumoniae R6

70.339

84.588

0.595
  endA Streptococcus pneumoniae TIGR4

70.339

84.588

0.595

Multiple sequence alignment