Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   DOU34_RS21000 Genome accession   NZ_CP030097
Coordinates   95841..96005 (+) Length   54 a.a.
NCBI ID   WP_269195032.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SH-B74     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 90841..101005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOU34_RS20995 srfAB 92786..95776 (+) 2991 Protein_78 surfactin non-ribosomal peptide synthetase SrfAB -
  DOU34_RS21000 comS 95841..96005 (+) 165 WP_269195032.1 competence protein ComS Regulator

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6180.18 Da        Isoelectric Point: 12.0559

>NTDB_id=299160 DOU34_RS21000 WP_269195032.1 95841..96005(+) (comS) [Bacillus amyloliquefaciens strain SH-B74]
MRARRNSSLNRSDKRLIRSIILFPQHSAGCISLISSDRPARATTSLLYFCWKGQ

Nucleotide


Download         Length: 165 bp        

>NTDB_id=299160 DOU34_RS21000 WP_269195032.1 95841..96005(+) (comS) [Bacillus amyloliquefaciens strain SH-B74]
ATGAGAGCGAGGAGGAACAGCAGTTTGAACCGATCCGACAAGCGCCTTATCAGGAGCATTATCCTGTTTCCTCAGCACAG
CGCAGGATGTATATCCTTAATCAGCTCGGACAGGCCAGCACGAGCTACAACGTCCCTGCTGTACTTCTGCTGGAAGGGTC
AGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

61.364

81.481

0.5

Multiple sequence alignment