Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ES968_RS06250 Genome accession   NZ_CP035395
Coordinates   1216946..1217863 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain SRCM103697     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1211946..1222863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES968_RS06235 (ES968_06235) trpS 1212526..1213518 (-) 993 WP_015483084.1 tryptophan--tRNA ligase -
  ES968_RS06240 (ES968_06240) oppA 1214262..1215899 (+) 1638 WP_014479443.1 oligopeptide ABC transporter substrate-binding protein OppA -
  ES968_RS06245 (ES968_06245) oppB 1216007..1216942 (+) 936 WP_014479444.1 oligopeptide ABC transporter permease OppB -
  ES968_RS06250 (ES968_06250) amiD 1216946..1217863 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  ES968_RS06255 (ES968_06255) oppD 1217868..1218944 (+) 1077 WP_077670618.1 oligopeptide ABC transporter ATP-binding protein OppD -
  ES968_RS06260 (ES968_06260) oppF 1218946..1219863 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  ES968_RS06265 (ES968_06265) yjbB 1219971..1221188 (+) 1218 WP_095010820.1 MFS transporter -
  ES968_RS06270 (ES968_06270) yjbC 1221352..1221930 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  ES968_RS06275 (ES968_06275) spx 1222111..1222506 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=299011 ES968_RS06250 WP_003232954.1 1216946..1217863(+) (amiD) [Bacillus subtilis strain SRCM103697]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=299011 ES968_RS06250 WP_003232954.1 1216946..1217863(+) (amiD) [Bacillus subtilis strain SRCM103697]
ATGCAGAACATTCCGAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATTATTATCGTGCTCATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCCCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGGCGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTTGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACGGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTCGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGCTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364

Multiple sequence alignment