Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   DOZ91_RS24420 Genome accession   NZ_CP030063
Coordinates   5103579..5105984 (+) Length   801 a.a.
NCBI ID   WP_127778433.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain ZB201705     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5098579..5110984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOZ91_RS24400 (DOZ91_24815) - 5099985..5100404 (+) 420 WP_034308657.1 Rrf2 family transcriptional regulator -
  DOZ91_RS24405 (DOZ91_24820) - 5100465..5101610 (+) 1146 WP_127778431.1 cysteine desulfurase family protein -
  DOZ91_RS24410 (DOZ91_24825) mnmA 5101640..5102755 (+) 1116 WP_034308651.1 tRNA 2-thiouridine(34) synthase MnmA -
  DOZ91_RS24415 (DOZ91_24830) - 5102877..5103542 (+) 666 WP_127778432.1 tetratricopeptide repeat protein -
  DOZ91_RS24420 (DOZ91_24835) recD2 5103579..5105984 (+) 2406 WP_127778433.1 ATP-dependent RecD-like DNA helicase Machinery gene
  DOZ91_RS24425 (DOZ91_24840) - 5106070..5106636 (+) 567 WP_034308646.1 LemA family protein -
  DOZ91_RS24430 (DOZ91_24845) - 5106636..5107406 (+) 771 WP_127778434.1 TPM domain-containing protein -
  DOZ91_RS24435 (DOZ91_24850) - 5107545..5108003 (+) 459 WP_127778435.1 PRC-barrel domain-containing protein -
  DOZ91_RS24440 (DOZ91_24855) - 5107993..5108208 (+) 216 WP_034311361.1 hypothetical protein -
  DOZ91_RS24445 (DOZ91_24860) - 5108435..5109511 (+) 1077 WP_095389837.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 801 a.a.        Molecular weight: 90550.30 Da        Isoelectric Point: 4.8233

>NTDB_id=298882 DOZ91_RS24420 WP_127778433.1 5103579..5105984(+) (recD2) [Peribacillus frigoritolerans strain ZB201705]
MSQQDSLDLFSEEKKFMKGSHLVTIFHNEENMYSVVRIRVHETNLNYEEKEAVVTGYFPRMHEDEIYIFYGAMKEHPRFG
LQFHVEHFRKDLPQSKEGIVSYLSGDLFKGIGKKTAESIVETLGEKAISKILAQPSLLDDIPKLSGEKAKGLYDTLVEHQ
GLEQVMIALNQYGFGPQLSMKIYQMYKQDTITMVQGNPYKLVEDIEGIGFGRADELGHQLGISGSHPDRIKAACLYTLES
QCLQDGNIYIEAEQLLEAVKRLLEENKRDRIEFTNISSEIIELTQEGKIVVEDQRIYPPSLFYSEKGIVINIKRLLAQTE
YEDQFPESEFLLALGELEERLDVSYAPAQKEAIQTALQSPMLILTGGPGTGKTTVIKGIVELYAELHGVSMDINDYKKEG
SDPFPFVLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFSHDEDNQLDGRIVIIDEVSMVDTWLAHQLFKALPENVQ
VILVGDEDQLPSVGPGQVLKDLLASNCVPTVSLEHIYRQADGSSIIELAHEIKKGRLPDDVTKQQEDRSFIRCQTNQIPQ
VIEKVVANARTKGFTSKDIQVLAPMYRGPAGIDALNKMLQEVFNSNANEKRREIKFGDVIYRTGDKVLQLVNQPEEGVFN
GDMGEIVSILFAKENTDSVDKLIISFEGIEVTYTKQDLNQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTA
ITRSKNFLILCGEEDAFRLGIERNDEMRRKTTLREKLREILSEEEMPVEKGEVHQEASYLDILMHADPMIGMENVTPYDF
M

Nucleotide


Download         Length: 2406 bp        

>NTDB_id=298882 DOZ91_RS24420 WP_127778433.1 5103579..5105984(+) (recD2) [Peribacillus frigoritolerans strain ZB201705]
TTGAGCCAGCAAGATTCGTTGGATTTGTTTTCAGAAGAGAAAAAGTTCATGAAAGGCAGTCATTTAGTGACGATCTTTCA
TAATGAAGAAAATATGTACTCGGTTGTGAGAATTCGTGTGCATGAAACGAATCTGAATTATGAAGAGAAGGAAGCGGTCG
TAACAGGTTATTTTCCAAGGATGCATGAGGATGAGATCTATATTTTTTATGGGGCCATGAAGGAACATCCGCGTTTTGGC
CTTCAATTTCATGTAGAGCATTTTCGCAAGGATCTGCCTCAATCCAAGGAAGGTATCGTCAGTTATTTATCAGGTGACCT
TTTCAAGGGCATTGGGAAAAAAACAGCCGAAAGCATTGTTGAGACACTGGGTGAAAAGGCCATTTCAAAAATTCTGGCTC
AGCCTTCGCTGCTTGATGATATCCCGAAGCTATCAGGGGAAAAGGCAAAGGGCCTCTATGATACATTAGTCGAGCATCAA
GGTCTGGAGCAAGTGATGATCGCCTTGAATCAATATGGCTTCGGTCCGCAGCTGTCGATGAAAATTTATCAAATGTATAA
GCAGGATACGATCACGATGGTTCAGGGAAATCCGTATAAGCTCGTAGAGGATATTGAAGGGATTGGATTTGGACGGGCGG
ATGAGCTTGGCCATCAGCTGGGCATTTCCGGCAGCCACCCCGACCGAATCAAGGCTGCGTGCTTGTATACGCTTGAATCC
CAATGCCTCCAGGACGGAAATATCTACATAGAAGCGGAGCAGCTCTTGGAAGCGGTCAAACGGCTGCTGGAGGAAAATAA
ACGGGATCGGATTGAGTTCACCAACATTTCCTCGGAAATAATCGAATTGACGCAAGAGGGGAAAATAGTTGTCGAGGATC
AACGAATTTATCCGCCTTCGCTATTCTATTCGGAAAAGGGAATCGTGATAAACATCAAGCGGCTGCTTGCTCAAACCGAG
TATGAGGACCAGTTCCCCGAATCGGAGTTCTTGCTGGCACTTGGGGAGCTGGAAGAACGGCTGGATGTTTCCTATGCCCC
GGCCCAAAAGGAAGCGATTCAAACAGCCCTGCAATCACCGATGCTAATCCTGACGGGGGGACCGGGTACCGGTAAGACGA
CAGTCATCAAAGGCATCGTTGAGCTATATGCAGAGCTGCATGGTGTATCCATGGACATTAACGATTATAAAAAAGAAGGA
AGCGATCCGTTTCCATTCGTACTTGCGGCTCCTACTGGCCGTGCAGCGAAACGCATGGCCGAGTCGACGGGGCTTCCAGC
AGTTACGATCCACCGTTTGCTGGGGTGGAACGGGAGTGAAGGCTTTTCCCATGATGAGGATAATCAGCTGGATGGCCGTA
TAGTGATCATCGATGAGGTTTCGATGGTGGATACGTGGCTTGCCCATCAATTGTTTAAAGCTCTGCCGGAAAATGTCCAA
GTGATATTGGTTGGTGATGAAGATCAGCTGCCATCTGTTGGCCCTGGGCAGGTTTTAAAGGATTTGCTTGCATCGAATTG
TGTACCGACTGTCAGTCTCGAACATATATATCGTCAAGCTGATGGGTCATCGATCATTGAATTGGCCCATGAAATCAAAA
AAGGAAGGCTTCCGGATGATGTCACGAAACAGCAGGAAGATCGATCGTTCATTCGCTGCCAAACCAATCAAATCCCCCAA
GTAATCGAGAAAGTGGTTGCCAATGCCAGGACGAAAGGCTTCACGTCCAAAGATATACAGGTGCTGGCTCCCATGTATAG
AGGGCCTGCCGGAATTGATGCACTGAATAAAATGCTTCAGGAAGTGTTCAATAGCAATGCGAATGAAAAGCGGCGGGAAA
TAAAATTCGGAGATGTGATATATAGAACCGGAGATAAGGTGCTTCAACTCGTGAACCAGCCAGAGGAAGGTGTCTTTAAT
GGCGATATGGGGGAAATCGTGTCCATATTGTTCGCTAAAGAAAATACCGATTCTGTCGATAAATTGATCATTTCGTTCGA
AGGCATCGAAGTGACTTACACGAAGCAGGATTTGAACCAGATTACACATGCCTATTGCTGCTCCATCCATAAGTCGCAGG
GAAGCGAATTCCCCATCGTCATTTTACCTGTAGTGAAAAGTTATTACCGGATGCTCCGCCGTAATTTATTGTATACGGCG
ATTACCCGCAGTAAAAATTTCTTGATCCTATGTGGTGAAGAAGATGCATTCCGTTTAGGGATCGAGCGTAATGATGAGAT
GCGCCGGAAAACGACTTTGCGTGAAAAGCTGCGGGAGATCTTGAGTGAAGAAGAAATGCCGGTCGAAAAAGGAGAGGTAC
ATCAAGAGGCAAGTTATCTTGATATTCTTATGCATGCTGACCCGATGATCGGGATGGAGAATGTCACGCCATATGATTTT
ATGTAG

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-555)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.422

100

0.624

Multiple sequence alignment