Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   DOM24_RS13065 Genome accession   NZ_CP030031
Coordinates   2765451..2765894 (-) Length   147 a.a.
NCBI ID   WP_034430461.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain LH6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2760451..2770894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOM24_RS13035 (DOM24_13035) - 2761020..2762006 (+) 987 WP_111282463.1 triacylglycerol lipase -
  DOM24_RS13040 (DOM24_13040) - 2762108..2763079 (+) 972 WP_111282465.1 triacylglycerol lipase -
  DOM24_RS13045 (DOM24_13045) rplS 2763139..2763513 (-) 375 WP_005024307.1 50S ribosomal protein L19 -
  DOM24_RS13050 (DOM24_13050) trmD 2763688..2764437 (-) 750 WP_111282467.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  DOM24_RS13055 (DOM24_13055) rimM 2764481..2765029 (-) 549 WP_005405234.1 ribosome maturation factor RimM -
  DOM24_RS13060 (DOM24_13060) rpsP 2765050..2765307 (-) 258 WP_005018185.1 30S ribosomal protein S16 -
  DOM24_RS13065 (DOM24_13065) pilE 2765451..2765894 (-) 444 WP_034430461.1 type IV pilin protein Machinery gene
  DOM24_RS13070 (DOM24_13070) - 2765881..2766366 (-) 486 WP_373867495.1 pilin -
  DOM24_RS13075 (DOM24_13075) - 2766431..2770351 (-) 3921 WP_111282469.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 15904.14 Da        Isoelectric Point: 9.6271

>NTDB_id=298585 DOM24_RS13065 WP_034430461.1 2765451..2765894(-) (pilE) [Acinetobacter radioresistens strain LH6]
MKVGKYNGFTLIEVMIVVAIIGILAAIAYPSYSQYIIRTKRTDAQSEMLQVAQRMQTYRAANNTFAGATINTVYGGSVIP
KQGTALYNLTFSPSPTTANEWTLIATPISSTSQANDGVICLNHQGQKFWVKGASACALSNTSNWDGR

Nucleotide


Download         Length: 444 bp        

>NTDB_id=298585 DOM24_RS13065 WP_034430461.1 2765451..2765894(-) (pilE) [Acinetobacter radioresistens strain LH6]
ATGAAAGTTGGTAAATATAATGGTTTTACGCTTATAGAAGTTATGATTGTAGTAGCTATTATTGGAATTTTAGCAGCGAT
TGCCTATCCTTCTTATAGCCAATATATTATAAGAACCAAACGTACAGATGCACAAAGTGAAATGTTGCAAGTTGCACAGC
GTATGCAAACCTATAGAGCAGCTAATAATACGTTCGCTGGTGCTACAATAAATACAGTTTATGGAGGCAGCGTGATCCCG
AAACAGGGAACAGCGCTTTATAACTTAACTTTTAGTCCCTCCCCGACCACAGCAAATGAATGGACATTAATAGCGACACC
AATTAGCAGCACATCTCAGGCTAATGATGGGGTTATTTGTCTGAATCACCAAGGCCAAAAATTCTGGGTCAAAGGTGCCA
GTGCCTGTGCTTTATCTAATACCTCTAACTGGGACGGCCGCTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(30-120)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

58.865

95.918

0.565
  comF Acinetobacter baylyi ADP1

53.901

95.918

0.517

Multiple sequence alignment