Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   B4O06_RS18140 Genome accession   NZ_CP029981
Coordinates   3232864..3233493 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 99-3165     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3227864..3238493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4O06_RS18125 helD 3228106..3230160 (-) 2055 WP_001295354.1 DNA helicase IV -
  B4O06_RS18130 yccF 3230283..3230729 (+) 447 WP_001261235.1 YccF domain-containing protein -
  B4O06_RS18135 yccS 3230739..3232901 (+) 2163 WP_072145235.1 YccS family putative transporter -
  B4O06_RS18140 sxy/tfoX 3232864..3233493 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  B4O06_RS18145 sulA 3233712..3234221 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  B4O06_RS18155 ompA 3234578..3235618 (+) 1041 WP_000750416.1 porin OmpA -
  B4O06_RS18160 matP 3235694..3236146 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  B4O06_RS18165 ycbZ 3236332..3238092 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=298047 B4O06_RS18140 WP_000839153.1 3232864..3233493(-) (sxy/tfoX) [Escherichia coli strain 99-3165]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=298047 B4O06_RS18140 WP_000839153.1 3232864..3233493(-) (sxy/tfoX) [Escherichia coli strain 99-3165]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment