Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BCERKBAB4_RS18370 Genome accession   NC_010184
Coordinates   3701893..3702672 (-) Length   259 a.a.
NCBI ID   WP_002014541.1    Uniprot ID   -
Organism   Bacillus mycoides KBAB4     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3696893..3707672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCERKBAB4_RS18345 (BcerKBAB4_3646) - 3697634..3698410 (-) 777 WP_002014545.1 isoprenyl transferase -
  BCERKBAB4_RS18350 (BcerKBAB4_3647) frr 3698496..3699053 (-) 558 WP_000531506.1 ribosome recycling factor -
  BCERKBAB4_RS18355 (BcerKBAB4_3648) pyrH 3699057..3699779 (-) 723 WP_002014544.1 UMP kinase -
  BCERKBAB4_RS18360 (BcerKBAB4_3649) tsf 3699846..3700733 (-) 888 WP_002088177.1 translation elongation factor Ts -
  BCERKBAB4_RS18365 (BcerKBAB4_3650) rpsB 3700837..3701538 (-) 702 WP_002088178.1 30S ribosomal protein S2 -
  BCERKBAB4_RS18370 (BcerKBAB4_3651) codY 3701893..3702672 (-) 780 WP_002014541.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BCERKBAB4_RS18375 (BcerKBAB4_3652) hslU 3702750..3704141 (-) 1392 WP_002014539.1 ATP-dependent protease ATPase subunit HslU -
  BCERKBAB4_RS18380 (BcerKBAB4_3653) hslV 3704164..3704706 (-) 543 WP_002014538.1 ATP-dependent protease proteolytic subunit HslV -
  BCERKBAB4_RS18385 (BcerKBAB4_3654) xerC 3704749..3705648 (-) 900 WP_078175468.1 tyrosine recombinase XerC -
  BCERKBAB4_RS18390 (BcerKBAB4_3655) trmFO 3705720..3707024 (-) 1305 WP_002014534.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.99 Da        Isoelectric Point: 4.7251

>NTDB_id=29798 BCERKBAB4_RS18370 WP_002014541.1 3701893..3702672(-) (codY) [Bacillus mycoides KBAB4]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKHMLAERQFPEEYTQSLF
NVTETSSNLGVDSDYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=29798 BCERKBAB4_RS18370 WP_002014541.1 3701893..3702672(-) (codY) [Bacillus mycoides KBAB4]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAGAT
GTCTGACACAATGTGTGAAGTAATTGAAGCGAACGTGTTCGTTGTAAGTCGTCGCGGTAAATTATTAGGATATGCGATTC
ACCAACAAATCGAAAACGAACGTATGAAGCACATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACGCAAAGTTTATTC
AATGTTACAGAAACATCTTCAAATTTAGGTGTGGATAGTGACTACACAGCATTCCCAGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACACTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATTCTTGCTGAATACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCGGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.275

98.456

0.456

Multiple sequence alignment