Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   C0W45_RS08415 Genome accession   NZ_CP029966
Coordinates   1594572..1595129 (-) Length   185 a.a.
NCBI ID   WP_035185909.1    Uniprot ID   A0AAJ0LDD0
Organism   Latilactobacillus curvatus strain ZJUNIT8     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1589572..1600129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0W45_RS08390 (C0W45_08390) - 1589888..1590520 (+) 633 WP_004265005.1 CPBP family intramembrane glutamic endopeptidase -
  C0W45_RS08395 (C0W45_08395) - 1590573..1591220 (-) 648 WP_004265080.1 redox-sensing transcriptional repressor Rex -
  C0W45_RS08400 (C0W45_08400) - 1591416..1593359 (+) 1944 WP_004265038.1 ABC-F family ATP-binding cassette domain-containing protein -
  C0W45_RS08405 (C0W45_08405) - 1593510..1593869 (-) 360 WP_004265057.1 YccF domain-containing protein -
  C0W45_RS08410 (C0W45_08410) - 1593976..1594293 (-) 318 WP_004265021.1 PTS sugar transporter subunit IIB -
  C0W45_RS08415 (C0W45_08415) sigH 1594572..1595129 (-) 558 WP_035185909.1 sigma-70 family RNA polymerase sigma factor Regulator
  C0W45_RS08420 (C0W45_08420) - 1595205..1595738 (-) 534 WP_004265051.1 NYN domain-containing protein -
  C0W45_RS08425 (C0W45_08425) rlmB 1595742..1596629 (-) 888 WP_080752752.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  C0W45_RS08430 (C0W45_08430) - 1596616..1597023 (-) 408 WP_004265086.1 Mini-ribonuclease 3 -
  C0W45_RS08435 (C0W45_08435) cysS 1597020..1598426 (-) 1407 WP_111447857.1 cysteine--tRNA ligase -
  C0W45_RS08440 (C0W45_08440) - 1598968..1600080 (-) 1113 WP_004265009.1 PIN/TRAM domain-containing protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 21709.91 Da        Isoelectric Point: 6.2310

>NTDB_id=297977 C0W45_RS08415 WP_035185909.1 1594572..1595129(-) (sigH) [Latilactobacillus curvatus strain ZJUNIT8]
MELAKRDANLIQAVVENDSEALDVLFKAYLPMVYRTFTPYYIRLFDEDDWLQEARIVCYETCQCYDQNCGKSFGGFYKLR
FHHHVLNLIRKELAQKRRVDQQALLFDCCPECNALAEDTVAYYQSTVEMRAYLETLSALELVAFRVLTGQLAVEQACSQL
DCTFEQMKRAQSRCQTKLKRFYTKQ

Nucleotide


Download         Length: 558 bp        

>NTDB_id=297977 C0W45_RS08415 WP_035185909.1 1594572..1595129(-) (sigH) [Latilactobacillus curvatus strain ZJUNIT8]
ATGGAATTAGCAAAACGTGATGCAAACTTAATTCAAGCGGTGGTTGAAAACGATTCTGAGGCGTTGGATGTTTTATTTAA
AGCCTACCTACCAATGGTTTATCGCACCTTTACTCCATATTATATTCGCTTATTTGATGAGGACGATTGGTTACAAGAAG
CGCGAATCGTCTGTTATGAGACTTGCCAGTGTTATGATCAAAATTGCGGCAAAAGTTTTGGTGGTTTTTATAAATTACGC
TTTCACCACCACGTATTAAACTTGATTCGCAAAGAACTTGCTCAGAAACGACGGGTCGATCAGCAAGCCCTGTTATTTGA
TTGTTGTCCGGAATGCAATGCGCTCGCTGAAGATACCGTGGCATACTATCAGTCAACGGTTGAAATGCGGGCGTACTTAG
AGACACTATCTGCTTTAGAGTTAGTGGCCTTTCGGGTTTTGACGGGGCAACTAGCAGTTGAGCAAGCGTGTAGCCAGCTA
GATTGCACGTTTGAACAGATGAAACGGGCACAATCGCGTTGCCAGACAAAATTAAAACGATTCTATACTAAACAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

73.077

98.378

0.719

Multiple sequence alignment